Table 3

Twenty most differentially expressed genes with higher expression in MGR stage relative to CSS stage
Accession Gene annotation1 MGR/CSS Fold-change2 q-value3
AT1G24020 MLP-LIKE PROTEIN 423 (MLP423) 16.7 2.9E-03
AT5G33370 GDSL-like lipase 5.7 2.3E-02
AT2G02320 PHLOEM PROTEIN 2-B7 (AtPP2-B7) 5.2 6.6E-03
AT2G38540 LIPID TRANSFER PROTEIN 1 (LP1) 5.2 5.0E-05
AT5G24780 VEGETATIVE STORAGE PROTEIN 1 (VSP1) 4.8 3.6E-03
AT2G02850 PLANTACYANIN (ARPN) 3.9 2.4E-03
AT2G33810 SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 3 (SPL3) 3.8 4.2E-02
AT3G04290 LI-TOLERANT LIPASE 1 (LTL1) 3.7 2.4E-03
AT1G55490 chloroplast 60‚ÄČkDa chaperonin beta subunit 3.6 9.1E-04
AT5G20630 GERMIN 3 (GER3) 3.5 3.8E-04
AT2G39670 radical SAM domain-containing protein 3.5 2.1E-02
AT3G47650 bundle-sheath defective protein 2 family / bsd2 family 3.4 3.2E-02
AT5G15230 GAST1 PROTEIN HOMOLOG 4 (GASA4) 3.4 3.1E-04
AT3G47340 GLUTAMINE-DEPENDENT ASPARAGINE SYNTHETASE (ASN1) 3.2 1.3E-02
AT5G20720 CHAPERONIN 20 (CPN20) 3.2 7.6E-03
AT5G55450 protease inhibitor/lipid transfer protein (LTP) family protein 3.2 3.6E-03
AT5G61170 40S ribosomal protein S19 (RPS19C) 3.1 4.3E-02
AT3G08740 elongation factor P (EF-P) family protein 3.1 2.0E-02
AT3G21410 F-box family protein (FBW1) 3.1 2.6E-02
AT2G02130 LOW-MW CYSTEINE-RICH 68 (LCR68)(PDF2.3) 3.0 3.5E-02

1Gene descriptions are abbreviated from TAIR10 genome release. Putative functions are stated in lowercase.

2Genes ranked according to fold-change values derived from log2 ratios of MGR (numerator) and CSS (denominator).

3 Derived from false discovery-rate correction of p-values.

Hall and Ellis

Hall and Ellis BMC Plant Biology 2013 13:14   doi:10.1186/1471-2229-13-14

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