Table 2

Twenty most differentially expressed genes with higher expression in MGR stage relative to YNG stage
Accession Gene annotation1 YNG/MGR Fold-change2 q-value3
AT3G13520 ARABINOGALACTAN PROTEIN 12 (AGP12) −6.8 3.1E-02
AT1G80170 putative polygalacturonase (pectinase) −7.3 1.4E-02
AT1G09540 MYB DOMAIN PROTEIN 61 (MYB61) −7.4 2.6E-02
AT3G05880 RARE-COLD-INDUCIBLE 2A (RCI2A) −7.5 1.3E-02
AT1G77330 similar to 1-aminocyclopropane-1-carboxylate oxidase −7.5 1.9E-02
AT1G72430 Auxin responsive SAUR protein −8.0 3.2E-02
AT4G23496 SPIRAL1-LIKE5 (SP1L5) −8.1 4.7E-02
AT4G03205 SOUL heme-binding family protein −8.1 1.9E-02
AT1G67865 unknown protein −8.2 3.4E-02
AT4G26320 ARABINOGALACTAN PROTEIN 13 (AGP13) −8.8 1.9E-02
AT3G19710 BRANCHED-CHAIN AMINOTRANSFERASE4 (BCAT4) −9.6 1.5E-02
AT5G48560 basic helix-loop-helix (bHLH) family protein −9.9 4.5E-02
AT3G55240 Overexpression leads to PEL (Pseudo-Etiolation in Light) phenotype −10.0 1.5E-02
AT1G74670 putative gibberellin-responsive protein (GASA6) −10.2 3.3E-02
AT4G30270 MERISTEM-5 (MERI5B) −11.5 1.6E-02
AT1G74660 MINI ZINC FINGER 1 (MIF1) −12.0 4.9E-03
AT4G29905 unknown protein −12.9 4.3E-02
AT3G45160 unknown protein −15.3 1.1E-02
AT5G05960 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein −24.2 1.5E-02
AT5G42180 peroxidase 64 (PER64) located in plant-type cell wall −40.0 9.4E-04

1Gene descriptions are abbreviated from TAIR10 genome release. Putative functions are stated in lowercase.

2Genes ranked according to fold-change values derived from log2 ratios of YNG (numerator) and MGR (denominator).

3 Derived from false discovery-rate correction of p-values.

Hall and Ellis

Hall and Ellis BMC Plant Biology 2013 13:14   doi:10.1186/1471-2229-13-14

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