Table 1

Twenty most differentially expressed genes with higher expression in YNG stage relative to MGR stage
Accession Gene annotation1 YNG/MGR Fold-change2 q-value3
AT1G07930 elongation factor 1-alpha / EF-1-alpha 22.5 4.1E-02
AT5G25754 unknown protein 19.2 4.7E-02
AT1G11520 spliceosome associated protein-related 18.9 3.4E-02
AT1G07940 elongation factor 1-alpha / EF-1-alpha 18.9 4.1E-02
AT5G22430 unknown protein 17.6 2.2E-02
AT1G75240 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 33 (AtHB33) 16.2 1.4E-02
AT4G14080 MATERNAL EFFECT EMBRYO ARREST 48 (MEE48) 15.4 2.2E-02
AT1G01300 aspartyl protease family protein located in membrane, plant-type cell wall 14.6 4.0E-02
AT2G07739 unknown protein 14.4 4.1E-02
AT3G13470 chaperonin, putative with domain Cpn60/TCP-1 (InterPro:IPR002423) 13.1 2.3E-02
AT4G34850 chalcone and stilbene synthase family protein involved in phenylpropanoid biosynthetic process 13.0 2.5E-02
AT3G17840 RECEPTOR-LIKE KINASE 902 (RLK902) 12.6 3.0E-02
AT1G52030 myrosinase binding protein, putative 12.2 2.2E-02
AT5G15720 GDSL-MOTIF LIPASE 7 (GLIP7) 11.6 3.7E-02
AT2G18020 EMBRYO DEFECTIVE 2296 (EMB2296) 11.5 3.6E-02
AT5G62080 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein 11.4 2.9E-02
AT2G01505 CLAVATA3/ESR-RELATED 16 (CLE16) 10.8 4.3E-02
AT3G45140 LIPOXYGENASE 2 (LOX2) 10.6 1.5E-02
AT1G62950 leucine-rich repeat transmembrane protein kinase 10.4 2.7E-02
AT3G55210 ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 63 (anac063) 10.0 3.0E-02
AT4G04720 CPK21 9.9 4.2E-02

1Gene descriptions are abbreviated from TAIR10 genome release. Putative functions are stated in lowercase.

2Genes ranked according to fold-change values derived from log2 ratios of YNG (numerator) and MGR (denominator).

3 Derived from false discovery-rate correction of p-values.

Hall and Ellis

Hall and Ellis BMC Plant Biology 2013 13:14   doi:10.1186/1471-2229-13-14

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