Additional file 6: Table S3.

ATCOECIS reports for enrichment of gene ontology (GO) terms for genes most significantly different (q-value<6.72E-02) between MGR and CSS stages. GO terms appearing more than once in the gene list are shown ranked according to significance of enrichment p-value (<0.05). Only GO terms with two or more genes in the input set and showing enrichment compared to the background frequency (in the full genome) are reported (number of genes indicated in brackets).[move to methods; P-values are calculated using the hypergeometric distribution [17]. Score indicates the fraction of input genes annotated with the GO term. 'Term occurrences' column indicates the number of co-occurences of each GO term in the AtCoeCis results among all expression categories (left-most column).

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Hall and Ellis BMC Plant Biology 2013 13:14   doi:10.1186/1471-2229-13-14