Table 3

Read counts of known miRNA in each library
miRNA_Name UF RF NON NOFF JON JOFF
oeu_miR156a 90,292 39,031 124,269 643,286 339,746 311,706
oeu_miR156b 90,252 39,016 124,180 643,040 339,621 311,629
oeu_miR156c 90,292 39,031 124,269 643,286 339,746 311,706
oeu_miR156d 90,218 39,076 124,178 643,011 339,606 311,576
oeu_miR156e 90,218 39,076 124,178 643,011 339,606 311,576
oeu_miR156f 90,292 39,031 124,269 643,286 339,746 311,706
oeu_miR156g 24,167 16,890 100,442 172,856 193,886 130,260
oeu_miR156h 24,044 16,818 100,233 172,426 193,558 129,940
oeu_miR156i 24,167 16,890 100,442 172,856 193,886 130,260
oeu_miR156j 24,167 16,890 100,442 172,856 193,886 130,260
oeu_miR156k 78 31 135 691 337 306
oeu_miR159a 605 363 2,593 3,673 1,908 7,809
oeu_miR159b 605 363 2,591 3,673 1,909 7,808
oeu_miR159c 605 363 2,593 3,673 1,908 7,809
oeu_miR159d 1 0 0 2 2 0
oeu_miR160a 4 2 4 83 18 109
oeu_miR160b 2 2 1 69 11 98
oeu_miR160c 2 2 1 69 11 98
oeu_miR160d 4 2 4 83 18 109
oeu_miR160g 0 0 0 1 0 0
oeu_miR164a 63 28 1,577 2,050 3,133 4,902
oeu_miR164b 63 28 1,575 2,046 3,136 4,896
oeu_miR164c 63 28 1,575 2,046 3,131 4,895
oeu_miR164d 63 28 1,577 2,050 3,133 4,902
oeu_miR164e 64 28 1,602 2,066 3,166 4,955
oeu_miR164f 1 2 0 0 0 1
oeu_miR166a 127,248 52,310 419,523 491,358 542,522 306,999
oeu_miR166b 127,229 52,256 419,792 491,598 543,180 307,541
oeu_miR166c 127,212 52,264 419,434 491,303 542,458 306,940
oeu_miR166d 127,249 52,247 419,941 491,769 543,446 307,715
oeu_miR166e 127,229 52,256 419,792 491,598 543,180 307,541
oeu_miR166f 127,249 52,247 419,941 491,769 543,446 307,715
oeu_miR166g 130,974 55,055 435,594 510,783 560,419 317,070
oeu_miR166h 130,974 55,056 435,594 510,783 560,419 317,070
oeu_miR166i 127,266 52,249 419,710 491,618 542,907 307,162
oeu_miR166j 127,334 52,402 419,709 491,540 542,715 307,163
oeu_miR166k 127,334 52,402 419,709 491,540 542,715 307,163
oeu_miR166l 127,266 52,249 419,710 491,618 542,907 307,162
oeu_miR166m 130,970 55,036 435,737 510,951 560,657 317,213
oeu_miR166n 8,529 6,286 18,521 23,769 21,358 15,080
oeu_miR166o 8,529 6,285 18,521 23,769 21,358 15,080
oeu_miR166p 2 0 3 13 11 10
oeu_miR166q 8,538 6,292 18,512 23,768 21,362 15,078
oeu_miR167a 19 13 359 141 318 412
oeu_miR167b 7 7 349 133 302 404
oeu_miR167c 19 13 360 141 318 412
oeu_miR167d 7 7 349 133 302 404
oeu_miR167e 31 7 204 200 492 427
oeu_miR167f 57 40 18,541 22,195 41,904 26,123
oeu_miR167g 57 40 18,598 22,204 41,915 26,140
oeu_miR168a 22,1292 157,636 163,173 198,720 108,056 95,642
oeu_miR168b 22,1753 158,132 163,292 198,885 108,320 95,878
oeu_miR169a 4 7 2 5 3 13
oeu_miR169b 4 7 2 5 3 13
oeu_miR169c 4 7 2 5 3 13
oeu_miR169d 0 0 48 41 42 59
oeu_miR169e 0 0 48 41 42 59
oeu_miR169f 0 0 50 41 41 59
oeu_miR169g 0 0 48 41 42 59
oeu_miR169h 0 0 48 41 42 59
oeu_miR169i 0 0 0 0 1 1
oeu_miR169j 0 0 0 0 1 1
oeu_miR169k 0 0 0 0 1 1
oeu_miR169l 0 0 0 0 1 1
oeu_miR169m 0 0 0 0 1 1
oeu_miR169r 0 0 0 0 2 10
oeu_miR169s 0 0 48 41 42 59
oeu_miR169v 0 0 0 0 1 1
oeu_miR169w 0 0 0 0 1 1
oeu_miR171a 33 17 12 12 9 12
oeu_miR171b 33 17 12 12 9 12
oeu_miR171c 0 0 4 0 3 3
oeu_miR171d 0 0 4 0 3 3
oeu_miR171e 33 17 12 12 9 11
oeu_miR171f 33 17 12 12 9 11
oeu_miR171g 33 17 13 12 9 12
oeu_miR171h 33 17 13 12 9 12
oeu_miR171i 33 17 12 12 9 11
oeu_miR172a 359 201 5,070 3,060 3,372 2,545
oeu_miR172b 359 202 5,070 3,060 3,373 2,545
oeu_miR172c 359 201 5,070 3,060 3,372 2,545
oeu_miR172d 3 1 6 12 14 9
oeu_miR172e 3 1 6 12 14 9
oeu_miR172f 359 202 5,070 3,060 3,373 2,545
oeu_miR172g 0 0 3 2 1 4
oeu_miR172h 0 0 3 2 1 4
oeu_miR172i 11 6 121 67 89 66
oeu_miR319a 0 0 0 1 2 6
oeu_miR319b 0 0 0 1 2 5
oeu_miR319c 0 0 1 2 2 7
oeu_miR319d 0 0 1 2 2 7
oeu_miR319e 0 0 0 2 0 5
oeu_miR319f 0 0 1 3 0 8
oeu_miR319g 0 0 1 3 0 8
oeu_miR319h 0 0 0 2 0 5
oeu_miR390a 114 109 87 176 105 97
oeu_miR390b 113 108 87 176 105 97
oeu_miR390c 114 109 87 176 105 97
oeu_miR390d 113 108 87 176 105 97
oeu_miR393a 0 7 2 1 2 4
oeu_miR393b 0 7 2 1 2 4
oeu_miR393c 16 57 132 215 341 509
oeu_miR393d 16 57 132 215 341 509
oeu_miR394a-5p 0 0 0 9 5 4
oeu_miR394b-5p 0 0 0 9 5 5
oeu_miR395b 16 1 2 13 96 39
oeu_miR395c 16 1 2 13 96 39
oeu_miR395d 16 1 2 13 96 39
oeu_miR395e 16 1 2 13 96 40
oeu_miR395f 16 1 2 13 96 40
oeu_miR395g 16 1 2 13 96 39
oeu_miR395h 16 1 2 13 96 39
oeu_miR395i 16 1 2 13 96 39
oeu_miR395j 16 1 2 13 96 39
oeu_miR396a 36 36 1,367 786 1,051 832
oeu_miR396b 36 36 1,367 786 1,051 832
oeu_miR396c 39 73 296 171 276 278
oeu_miR396d 39 73 296 171 276 278
oeu_miR396e 39 74 296 172 276 278
oeu_miR396f 0 0 222 61 90 357
oeu_miR396g 0 0 269 95 116 525
oeu_miR397a 6 6 71 163 246 300
oeu_miR397b 0 0 0 1 0 2
oeu_miR398b 0 1 2 9 9 10
oeu_miR398c 0 1 2 9 9 10
oeu_miR399b 0 0 0 0 0 1
oeu_miR399c 0 0 0 0 0 1
oeu_miR399f 0 0 0 0 0 2
oeu_miR399g 0 0 0 0 0 1
oeu_miR399i 9 10 2 7 23 39
oeu_miR403a 121 105 945 968 1,360 1,130
oeu_miR403b 121 105 941 966 1,359 1,125
oeu_miR403c 121 105 941 966 1,357 1,124
oeu_miR408 1 2 5 60 70 97
oeu_miR530a 0 0 0 1 1 0

Yanik et al.

Yanik et al. BMC Plant Biology 2013 13:10   doi:10.1186/1471-2229-13-10

Open Data