Open Access Highly Accessed Research article

Genome-wide identification of alternate bearing-associated microRNAs (miRNAs) in olive (Olea europaea L.)

Huriye Yanik1, Mine Turktas1, Ekrem Dundar2, Pilar Hernandez3, Gabriel Dorado4 and Turgay Unver1*

Author Affiliations

1 Faculty of Science, Department of Biology, Cankiri Karatekin University, 18100, Cankiri, Turkey

2 Department of Biology, Balikesir University, Faculty of Art and Science, 10145, Balikesir, Turkey

3 Instituto de Agricultura Sostenible (IAS-CSIC), Alameda del Obispo s/n, 14080, Córdoba, Spain

4 Dep. Bioquímica y Biología Molecular, Campus Rabanales C6-1-E17, Campus de Excelencia Internacional Agroalimentario (ceiA3), Universidad de Córdoba, 14071, Córdoba, Spain

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BMC Plant Biology 2013, 13:10  doi:10.1186/1471-2229-13-10

Published: 15 January 2013

Additional files

Additional file 1:

Sequences of conserved miRNAs discovered in olive. A total of 136 conserved miRNA, belonging to 22 miRNA families, were identified in the six Olea europaea L. libraries.

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Additional file 2:

Predicted secondary structures of the putative novel miRNA. A total of 38 putative novel miRNA were detected in the six libraries. The mature miRNA sequences are shown in green color.

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Additional file 3:

The list of miRNA* sequences from six sRNA libraries.

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Additional file 4:

Gene ontology terms of biological function and molecular processes of miRNA targets. Members of 22 conserved miRNA families were involved in diverse biological functions and processes.

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Additional file 5:

The most abundant gene ontology terms from the biological function ontology. Eight ontology terms were found with significant abundance (p <0.05).

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Additional file 6:

The most abundant gene ontology terms from the molecular process ontology. A total of 108 ontology terms were found with significant abundance (p <0.05).

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Additional file 7:

Pathway annotation of the miRNA targets. The miRNA targets were included in 130 KEGG pathways.

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Additional file 8:

Primer sequences of selected miRNA and target genes for qRT–PCR validation experiments.

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