Table 2

Homologous TDFs with high sequence similarity
Hypothetical 1 Hypothetical 2 M6PIa PIP1b SOD CCc
01E01 02 C11 A02C03 A04H02 05 C11 08D03 06 C03 06E09 A04A08 A04G04
MseI/TaqI* AC/TC TC/TC TG/CA CT/CA GT/AG GT/AC GT/AG TG/AG TC/CA AC/CA
bp% 223 223 206 342 221 215 537 274 334 310
Expression dn L dn R dn R up R up R up R up R up L up R dn L
dn R dn R
Similarity to AD genomes§ 100% A 95% A 98% Gh 99% Gh 98% Gh 99% Gh 99% A 99% A
98% D 97% D 98% D 98% D 100% Gh 100% Gh
100% Gh 98% Gh 99% Gh 99% Gh 100% Gb 100% Gb
100% Gb 98% Gb 99% Gb 99% Gb

aMannose 6 phosphate isomerase; bplasma membrane intrinsic protein 1; csuperoxide dismutase copper chaperone.

*Two nucleotide extensions at 3’-termini of each selective primer set.

%Sizes of cDNA-AFLP bands.

up and dn represent up-regulation and down-regulation, respectively in root (R) and leaf (L) tissues.

§Genomes from Gossypium arboreum (A), Gossypium raimondii (D), Gossypium hirsutum (Gh), and Gossypium barbadense (Gb).

Park et al.

Park et al. BMC Plant Biology 2012 12:90   doi:10.1186/1471-2229-12-90

Open Data