Table 2

Different components of the raw reads in each sample

Summary

Clean reads

Only Adaptor

Containing N

Low Quality


Daye3bianzhong

11769284(98.64%)

73363(0.61%)

159(0.00%)

88436(0.74%)

Yongan1hao

11889409(98.69%

84548(0.70%)

192(0.00%)

73571(0.61)

Yongan2hao

11111041(97.83)

179199(1.58%)

177(0.00%)

66890(0.59%)

Yongan3hao

12447409(98.85%)

83532(0.66%)

204(0.00%)

61217(0.49%)

Yongan4hao

12067757(98.86%)

85102(0.70%)

259(0.00%)

54189(0.44%)


Note: The percentages of reads containing N, adaptors, low quality, clean reads. The numbers in parentheses indicate the percentage of each type of read among the total raw reads

Sun et al. BMC Plant Biology 2012 12:53   doi:10.1186/1471-2229-12-53

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