Table 2

List of putative regulatory elements present in promoters of nine genes.

Motif

Sequence

Function

PAL

C4H

HCT

C3H

HQT

CHS

F3H

DFR

ANS


Box 4

ATTAAT

light responsiveness

3

4

2

1

2

1

4

1

2


Box I

TTTCAAA

light responsive element

1

3

2

2

1

1

3

2

2


CGTCA-motif

CGTCA

MeJA-responsiveness

2

0

1

0

0

2

0

3

0


EIRE

TTCGACC

elicitor-responsive element

0

0

0

0

1

0

0

0

0


ERE

ATTTCAAA

ethylene-responsive element

1

2

2

1

0

0

1

0

0


G-Box

CACGTN

light responsiveness

2

0

4

0

1

5

2

8

1


GA-motif

AAGGAAGA

part of a light responsive element

0

0

0

0

2

0

1

0

1


GATA-motif

GATAGGA

part of a light responsive element

0

2

0

0

0

1

3

1

0


GT1-motif

GGTTAA

light responsive element

1

2

2

1

2

1

1

2

2


HSE

AAAAAATTTC

heat stress responsiveness

1

2

2

1

0

0

1

3

3


I-box

AGATAAGG

part of a light responsive element

1

2

0

0

1

0

3

2

2


L-box

TCTCACCAACC

part of a light responsive element

1

1

1

1

0

0

0

1

0


LTR

CCGAAA

low-temperature responsiveness

0

0

0

0

1

0

0

0

0


TC-rich repeats

RTTTTCTTMM

defense & stress responsiveness

5

1

5

2

3

0

4

3

1


TCT-motif

TCTTAC

part of a light responsive element

1

2

3

1

0

1

0

0

0


Circadian

CAANNNNATC

circadian control

1

2

1

3

0

1

0

0

3


Number of times the element present in a specific promoter is given in the gene column. Standard IUPAC nucleotide codes were used for variable bases

Payyavula et al. BMC Plant Biology 2012 12:39   doi:10.1186/1471-2229-12-39

Open Data