Figure 4.

VANTED Data Visualisation Example. Measured data from experiments stored in OPTIMAS-DW can be mapped onto pathways stored in MetaCrop [5] by using the VANTED [4] software. It enables the user to visualise the data and to perform further data analysis. The map is visualised by the Systems Biology Graphical Notation (SBGN) [23]. The small squares represent chemical reactions. The reactions are catalysed by enzymes represented as rectangular containers with rounded corners. The catalysis is represented by a small empty circle. The metabolites are illustrated as circular containers and are either reactant or product of a reaction. When a metabolite occurs multiple times it is decorated with a clone marker (e.g. NAD+).

Colmsee et al. BMC Plant Biology 2012 12:245   doi:10.1186/1471-2229-12-245
Download authors' original image