Open Access Highly Accessed Database

OPTIMAS-DW: A comprehensive transcriptomics, metabolomics, ionomics, proteomics and phenomics data resource for maize

Christian Colmsee1, Martin Mascher1, Tobias Czauderna1, Anja Hartmann1, Urte Schlüter2, Nina Zellerhoff3, Jessica Schmitz3, Andrea Bräutigam4, Thea R Pick45, Philipp Alter6, Manfred Gahrtz6, Sandra Witt7, Alisdair R Fernie7, Frederik Börnke2, Holger Fahnenstich8, Marcel Bucher3, Thomas Dresselhaus6, Andreas PM Weber4, Falk Schreiber19, Uwe Scholz1* and Uwe Sonnewald2

Author Affiliations

1 Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), 06466 Stadt Seeland, Corrensstr. 3

2 Department of Biology, Friedrich-Alexander University of Erlangen-Nuremberg, 91054 Erlangen, Staudtstr. 5, Germany

3 University of Cologne, Botanical Institute, 50923 Köln, Albertus-Magnus-Platz, Germany

4 Plant Biochemistry, Heinrich-Heine-University, Universitätsstr. 1, 40225 Düsseldorf, Germany

5 International Graduate Program for Plant Science (iGrad-plant), Heinrich Heine University Düsseldorf, 40225 Düsseldorf, Germany

6 Cell Biology and Plant Biochemistry, University of Regensburg, Universitätsstr. 31, 93040 Regensburg, Germany

7 Department of Molecular Physiology, Max Planck Institute of Molecular Plant Physiology, 14476 Potsdam-Golm, Am Mühlenberg 1, Germany

8 metanomics GmbH, 10589 Berlin, Tegeler Weg 33, Germany

9 Martin Luther University Halle-Wittenberg, Institute of Computer Science, 06120 Halle, Von-Seckendorff-Platz 1, Germany

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BMC Plant Biology 2012, 12:245  doi:10.1186/1471-2229-12-245

Published: 29 December 2012

Additional files

Additional file 1:

OPTIMAS Database Schema. The OPTIMAS Database Schema can be divided into two main parts, the metadata on the one side and the data domain schemas on the other side. The metadata and each data domain schema are linked through table optimas.t103_measurement_ value. The primary key of the data domain entry is stored in t103_ measurement_value_id while the information about schema and table is stored in the related tables.

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