Table 2

Frequency of different type of motif in dinucleotide and trinucleotide SSRs
Type of motif Number of SSR Frequency (%)
AT/TA 31 5.4*
AG/GA/CT/TC 493 85.7
AC/CA/TG/GT 47 8.2
GC/CG 4 0.7
AAG/AGA/GAA/CTT/TTC/TCT 805 19.3**
AAT/ATA/TAA/ATT/TTA/TAT 22 0.5
ATG/TGA/GAT/CAT/ATC/TCA 438 10.5
AAC/ACA/CAA/GTT/TTG/TGT 99 2.4
ACC/CCA/CAC/GGT/GTG/TGG 414 9.9
AGG/GGA/GAG/CCT/CTC/TCC 1,119 26.8
AGT/GTA/TAG/ACT/CTA/TAC 38 0.9
AGC/GCA/CAG/GCT/CTG/TGC 673 16.1
ACG/CGA/GAC/CGT/GTC/TCG 178 4.3
GGC/GCG/CGG/GCC/CCG/CGC 385 9.2

*Frequency of motifs in total number of dinucleotide SSRs.

**Frequency of motifs in total number of trinucleotide SSRs.

Zhao et al.

Zhao et al. BMC Plant Biology 2012 12:237   doi:10.1186/1471-2229-12-237

Open Data