Email updates

Keep up to date with the latest news and content from BMC Plant Biology and BioMed Central.

Open Access Research article

Transcriptome response analysis of Arabidopsis thaliana to leafminer (Liriomyza huidobrensis)

Sufang Zhang12, Zhen Zhang2 and Le Kang1*

Author Affiliations

1 State Key Laboratory of Integrated Management of Pest Insects and Rodents, Institute of Zoology, Chinese Academy of Sciences, Beijing, China

2 Key Laboratory of Forest Protection, Research Institute of Forest Ecology, Environment and Protection, Chinese Academy of Forestry, State Forestry Administration, Beijing, China

For all author emails, please log on.

BMC Plant Biology 2012, 12:234  doi:10.1186/1471-2229-12-234

Published: 11 December 2012

Additional files

Additional file 1:

qRT-PCR validation of gene expression from microarray hybridization. The data are fold changes averaged over 3–4 repetitions, from both qRT-PCR and microarray hybridization.

Format: PDF Size: 529KB Download file

This file can be viewed with: Adobe Acrobat Reader

Open Data

Additional file 2:

Gene Ontology (GO) term enrichment status for SI exclusively-regulated genes. The graph displays term enrichment levels along with the GO term hierarchy within the “biological process” branch. The analysis was performed using EasyGO. Classification terms and their serial numbers are represented as rectangles. Numbers in brackets represent the total number of genes that may be involved in the corresponding biological processes. The color scale shows the P-value cutoff levels for each biological process. Deeper colors represent the more significant biological processes in the putative signal pathway.

Format: PDF Size: 135KB Download file

This file can be viewed with: Adobe Acrobat Reader

Open Data

Additional file 3:

GO term enrichment of locally up-regulated genes in leafminer-damaged A. thaliana. The graph displays term enrichment levels along with the GO term hierarchy within the “biological process” branch. The analysis was performed using EasyGO. Classification terms and their serial numbers are represented as rectangles. Numbers in brackets represent the total number of genes that may be involved in the corresponding biological processes. The color scale shows the P-value cutoff levels for each biological process. Deeper colors represent the more significant biological processes in the putative signal pathway.

Format: PDF Size: 354KB Download file

This file can be viewed with: Adobe Acrobat Reader

Open Data

Additional file 4:

GO term enrichment of systemically up-regulated genes in leafminer-damaged A. thaliana. The graph displays term enrichment levels along with the GO term hierarchy within the “biological process” branch. The analysis was performed using EasyGO. Classification terms and their serial numbers are represented as rectangles. Numbers in brackets represent the total number of genes that may be involved in the corresponding biological processes. The color scale shows the P-value cutoff levels for each biological process. Deeper colors represent the more significant biological processes in the putative signal pathway.

Format: PDF Size: 262KB Download file

This file can be viewed with: Adobe Acrobat Reader

Open Data

Additional file 5:

GO term enrichment of locally down-regulated genes in leafminer-damaged A. thaliana. The graph displays term enrichment levels along with the GO term hierarchy within the “biological process” branch. The analysis was performed using EasyGO. Classification terms and their serial numbers are represented as rectangles. Numbers in brackets represent the total number of genes that may be involved in the corresponding biological processes. The color scale shows the P-value cutoff levels for each biological process. Deeper colors represent the more significant biological processes in the putative signal pathway.

Format: PDF Size: 237KB Download file

This file can be viewed with: Adobe Acrobat Reader

Open Data

Additional file 6:

GO term enrichment of systemically down-regulated genes in leafminer-damaged A. thaliana. The graph displays term enrichment levels along with the GO term hierarchy within the “biological process” branch. The analysis was performed using EasyGO. Classification terms and their serial numbers are represented as rectangles. Numbers in brackets represent the total number of genes that may be involved in the corresponding biological processes. The color scale shows the P-value cutoff levels for each biological process. Deeper colors represent the more significant biological processes in the putative signal pathway.

Format: PDF Size: 136KB Download file

This file can be viewed with: Adobe Acrobat Reader

Open Data

Additional file 7:

Fold changes of some key marker genes of SA, JA, and ET pathways in A. thaliana induced by leafminer and other organisms.

Format: XLS Size: 22KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 8:

Fold changes of genes influencing glucosinolate metabolism in A. thaliana induced by leafminer or other organisms.

Format: XLS Size: 28KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 9:

Fold changes of some important genes related to plant response to biological attackers, including oxidative stress, cell wall biosynthesis and modification, photosynthesis, signal transduction, and nitrogen and carbohydrate metabolism in A. thaliana induced by leafminer and other organisms.

Format: XLS Size: 25KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 10:

List of data downloaded from the TAIR microarray database.

Format: XLS Size: 25KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data