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Open Access Highly Accessed Research article

Identification and profiling of novel microRNAs in the Brassica rapa genome based on small RNA deep sequencing

Bumjin Kim1, Hee-Ju Yu2, Sin-Gi Park1, Ja Young Shin1, Mijin Oh1, Namshin Kim3 and Jeong-Hwan Mun1*

  • * Corresponding author: Jeong-Hwan Mun munjh@rda.go.kr

  • † Equal contributors

Author Affiliations

1 Department of Agricultural Biotechnology, National Academy of Agricultural Science, Rural Development Administration, 150 Suin-ro Gwonseon-gu, Suwon, 441-707, Korea

2 Department of Life Sciences, The Catholic University of Korea, 43 Jibong-ro Wonmi-gu, Bucheon, 420-743, Korea

3 Korean Bioinformation Center, Korea Research Institute of Bioscience and Biotechnology, 125 Gwahak-ro Yuseong-gu, Daejeon, 305-806, Korea

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BMC Plant Biology 2012, 12:218  doi:10.1186/1471-2229-12-218

Published: 19 November 2012

Additional files

Additional file 1:

Figure S1. Size distribution of unique small RNA sequence reads obtained from the five tissue types (seedlings, roots, petioles, leaves, and flowers) of B. rapa using Illumina GA IIx.

Format: PPTX Size: 53KB Download file

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Additional file 2:

Table S1. Statistics of the small RNA sequence matches on the B. rapa genome under two-mismatch condition.

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Additional file 3:

Table S2. Summary of miRNAs identified in this study. The miRNA sequences and their genomic positions with target genes and expression levels in the tissues are presented.

Format: XLSX Size: 108KB Download file

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Additional file 4:

Table S3. Flower- and petiole-specific miRNAs and their target genes.

Format: XLSX Size: 43KB Download file

Open Data