Identification and profiling of novel microRNAs in the Brassica rapa genome based on small RNA deep sequencing
- Equal contributors
1 Department of Agricultural Biotechnology, National Academy of Agricultural Science, Rural Development Administration, 150 Suin-ro Gwonseon-gu, Suwon, 441-707, Korea
2 Department of Life Sciences, The Catholic University of Korea, 43 Jibong-ro Wonmi-gu, Bucheon, 420-743, Korea
3 Korean Bioinformation Center, Korea Research Institute of Bioscience and Biotechnology, 125 Gwahak-ro Yuseong-gu, Daejeon, 305-806, Korea
BMC Plant Biology 2012, 12:218 doi:10.1186/1471-2229-12-218Published: 19 November 2012
Additional file 1:
Figure S1. Size distribution of unique small RNA sequence reads obtained from the five tissue types (seedlings, roots, petioles, leaves, and flowers) of B. rapa using Illumina GA IIx.
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Additional file 2:
Table S1. Statistics of the small RNA sequence matches on the B. rapa genome under two-mismatch condition.
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Additional file 3:
Table S2. Summary of miRNAs identified in this study. The miRNA sequences and their genomic positions with target genes and expression levels in the tissues are presented.
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Additional file 4:
Table S3. Flower- and petiole-specific miRNAs and their target genes.
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