Table 1 |
||
| Group and sub-group of consensus specific conserved amino acids motifs | ||
| Motifa | E-value | Multilevel consensous sequenceb |
| 1 | 3.3e-3898 | CPRCDST[ND]TKFCY[YF]NNY[SN]LSQPR[HY]FC[KR][AT]CRRYWT[KRA]GG[AS]LRNVPVGGG[CR]R[KR] |
| 3 | 1.0e-081 | [GAD][DA][GAS][GLA][IF]KLFG[KR][VT]I[PT][LVP][PQ] |
| 4 | 1.9e-054 | [ALP][PRL][VAFL][LM][QHK][AG]NP[AV]A[LF][ST]RS[QV][ST]FQE |
| 5 | 2.0e-040 | GA[FL]SAMELLRSTGCY[MV]PL[PQ]Q |
| 6 | 7.7e-148 | [PS][MG]SM[ST]ERAR[LM]A[RK][VI]P[QL]PEPGL[KN] |
| 7 | 2.8e-043 | [DK][PV][AP][AT][AADGSTIDLA[ML]LY[SA]KFL[SN][HN]Q |
| 8 | 5.4e-034 | LGEL[NA]F[AGSV][MV]DQSC[FY]D[SA]LGLP[TAM][DP] |
| 10 | 6.5e-027 | [HP]GP[VL]RPDM[VL]LEGMVGN |
| 11 | 7.1e-027 | R[LM]LFPFEDLKP |
| 12 | 9.0e-026 | [HG][EG][GA]A[HQ]DLNLAFPHH[HG] |
| 13 | 3.3e-024 | [WM][PV][NPA][GT]AW[NS][ALS]PW[PI] |
| 14 | 2.7e-011 | [PQ][QP]FA[GT]VDLRRPKGY |
| 15 | 3.1e-012 | [EDQ][FY][MAPT]AFPSLESSS[VIM][CG][NG] |
| 28 | 7.2e-209 | [GEKR][DE][DE][KN][GER][EN][GKN][KS][LV]W[VI]PKT[LI]RID[DN][PA][DA]E[AV]A[KR]SSI[WR][SAT][TL][LFI]GI[KE][PG][DG][DK][RKPV]G[IM] [FD][KR][SPG][FR][QG][SC][KG] |
| 29 | 2.9e-074 | [KQ]T[EAQ][DGNS][DE][EGT][SA][SDN][QE][DEK][KE][VK]LKKPDKILP |
| 30 | 1.1e-030 | S[PSI][VST][CS][ST]M[SN][SGN][SC][FP][TV]LGKH[PS]R[DE][GS]D[] |
| 31 | 6.2e-036 | MDAA[HQ]W[HP]QGLGLVKPMEEM[LI]M |
| 32 | 2.8e-027 | [NM][G][LM]EQWR[AL][AQ]QMQSFPFFHAMDHQ |
| 33 | 7.3e-026 | [AG]HHHHGSSA |
| 34 | 2.1e-030 | R[RK][AL]RPQ[KH][ED][KQ][AP][LI] |
| 35 | 6.2e-027 | [STI][TFQ][AFNPT][NSTY][PAS][FDV][ADP][AGPT][DLP][VLS][PQ]PPAP[IM]FADQA[AT][AT][LF]ASLF[AG][PT]P[PR]P[PA][PF][LST][PFQ][VAS] [FAL][SNPQ][FAR] |
| 36 | 2.6e-025 | MQ[ED]F[QH][SP][IV]PGL[AT]GRLFGGAA[AD][AR][ADP][AID][RGIV][RAL] |
| 37 | 1.2e-016 | PMH[FI]CMDSDWLKG[IM]V |
| 38 | 1.7e-036 | LSSWCSIVPSLSTWEEPKYDSLDSFPDD[AT][ML]SLH[DE][CGH][GIM][IL] |
| 39 | 8.9e-015 | RVADHQHDDGRRAVRRGDVRALRRRRLPAHGPFVGTVVAAVTVVVVRCNL |
| 40 | 2.8e-014 | EEWMQEQDGLLCMRGRRCGRRGGCLPRPRDWFAALLAADPAAAAVTRDQ |
| 41 | 2.3e-011 | TVADM[AT]PF[MT]SLDAGIFELGD[AV][PS]PA[AD]YWN[AG]GSCWTDV[PQ]DP[NS]VYL |
a Numbers correspond to the motifs described in Figure 4. b Consensus amino acid sequences obtained from the analysis of the 81 Brachypodium, rice and barley Dof genes with the MEME software. Motifs from 1 to 15 are equivalent to the motifs 1 to 15 described in Additional files 2 and 3. Motif 1 corresponds to the DOF DNA-binding domain.
Hernando-Amado et al. BMC Plant Biology 2012 12:202 doi:10.1186/1471-2229-12-202
