Table 2

Putative aspartic acid-rich (Asp-rich) protein genes found in different species, with information on the number of associated ESTs supporting their expression in different tissues, and total number of ESTs for each species

Gene ID

Species

Db

Genome location

EST no.

Tissue

EST total no.


cit.11563

C. clementina

H, P

scaffold_9: 2625370-2627369

26

Callus, seedling, leaf (healthy and subjected to biotic and abiotic stress), mixed tissues

558387

cit.5456

C. clementina

H, P

scaffold_9: 2630019-2630586

13

Root challenged with nematode or abiotic stresses, seedling, callus, ovaries (abscission zone), cambium

558387

cit.5776

C. clementina

H, P

scaffold_9: 2635345-2635854

6

Roots with iron deficiency, seedling, CTV infected leaves

558387

29807.t000019

R. communis

P

29807: 160071-160289

0

62592

29807.t000020

R. communis

P

29807: 162893-163060

0

62592

29807.t000021

R. communis

P

29807: 166312-166566

0

62592

POPTR_0005s09890

P. trichocarpa

P

scaffold_5: 6981801-6981953

1

Bark challenged with insects

163281

Medtr2g097910

M. truncatula

P

MtChr2: 23065990-23066574

0

281422

Medtr2g097920

M. truncatula

P

MtChr2: 23068445-23068814

1

Virus-infected leaves

281422

Medtr2g097930

M. truncatula

P

MtChr2: 23070933-23071212

0

281422

Medtr2g097940

M. truncatula

P

MtChr2: 23073825-23074037

0

281422

Medtr2g097960

M. truncatula

P

MtChr2: 23078947-23079251

1

Flowers, early seeds, late seeds and stems

281422

Medtr7g104220

M. truncatula

P

MtChr7: 23576194-23576346

0

Medtr7g104490

M. truncatula

P

MtChr7: 23711526-23711678

0

281422

AT1G47395

A. thaliana

P

Chr1: 17383034-17383408

2

Mixed library of flower, leaf and root

1529700

AT1G47400

A. thaliana

P

Chr1: 17385717-17386186

1

Inflorescence

1529700

asmbl_6543.p5arabi0

A. thaliana

P

Chr1:17389096-17389541

37

Mixed

1529700

923037

A. lyrata

P

scaffold_1: 23646793-23646985

0

583

923038

A. lyrata

P

scaffold_1: 23656301-23656493

0

583

923039

A. lyrata

P

scaffold_1: 23659179-23659371

0

583

923040

A. lyrata

P

scaffold_1: 23667427-23667637

0

583

923041

A. lyrata

P

scaffold_1: 23669301-23669511

0

583

923042

A. lyrata

P

scaffold_1: 23670810-23671020

0

583

923043

A. lyrata

P

scaffold_1: 23672121-23672332

0

583

C6T1M0

G. max

U

Gm05: 8142747-8142956

14

Mixed, root, cotyledon, leaf, seedlings treated with salicylic acid, whole plant

1461624

C6T2M5

G. max

U

Gm06: 21775640-21775813

7

Mixed, mixed stressed tissues, root, pod, flower, tissue culture

1461624

CGD0032389

T. cacao

CGD

super_9: 9549794-9550390

12

Pod, wood, leaf, flower, cushion

159996

CGD0032388_alt

T. cacao

CGD

super_9: 9552787-9553408

2

Leaves sprayed with the defense elicitors

159996

cassava4.1_020818m.g

M. esculenta

P

scaffold07478: 525348-525861

6

Mixed tissues from water stressed plant

80631

DW225255

G. hirsutum

G

3

Stem, mixed (meristematic region, very young fiber, roots, stem)

274247

JG443702

M. × domestica

G

10

Young leaves inoculated with Marssonina coronaria, flower, fruit, bud, leaf

324742

GD112635

C. annuum

G

4

Callus

118060

BQ513915

S. tuberosum

G

3

Mixed

249616

CV506984

S. tuberosum

G

1

Mixed floral

249616

BP128846

N. tabacum

G

1

Cell culture

332667

CK289672

N. benthamiana

G

1

Abiotic and biotic stress-treated leaves, callus tissue and root tissue

56080

BI207662

S. lycopersicum

G

2

Suspension cultures

299460

BJ560905

I. nil

G

3

Flowers and flower buds

62282

GW342884

C. sinensis

G

3

Leaves induced by Ectropis obliqua feeding

20,277

CV534433

P. vulgaris

G

1

Nodules

116,836

AJ765027

G. hybrida

G

1

Flower organ (pappus bristles)

16997

DN950726

Q. robur

G

1

Tissue culture growing 2 days in hypertonic medium

81671

EX249889

C. papaya

G

1

Flowers after meiosis

77393

CU434296

C. hemisphaerica

G

1

Not specified

85991

CB289635

V. aestivalis

G

3

Leaves

2101

DW174778

L. virosa

G

1

Mixed

30068

FN002522

P. × hybrida

G

2

Roots, developing ovaries

50705

GE593719

C. cardunculus

G

1

Green globe

36323


EST no. refers to ESTs found in dbEST database which typically showed query coverage and percentage of identity above 90%. EST total no. refers to the total number of ESTs deposited in the dbEST database of NCBI until August 2011. Db refers to the database from which the information regarding the Asp-rich protein genes were retrieved. H, Harvest database; P, Phytozome; G, GenBank; U, Uniprot; CGD, Cacao Genome Database

Caruso et al. BMC Plant Biology 2012 12:20   doi:10.1186/1471-2229-12-20

Open Data