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Open Access Highly Accessed Research article

Identification of wild soybean miRNAs and their target genes responsive to aluminum stress

Qiao-Ying Zeng, Cun-Yi Yang, Qi-Bin Ma, Xiu-Ping Li, Wen-Wen Dong and Hai Nian*

Author Affiliations

State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, College of Agriculture, South China Agricultural University, Guangzhou, 510642, China

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BMC Plant Biology 2012, 12:182  doi:10.1186/1471-2229-12-182

Published: 5 October 2012

Additional files

Additional file 1:

Identification of known miRNAs obtained by high-throughput sequencing. Detailed information of total known miRNAs identified in this study.

Format: XLS Size: 58KB Download file

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Open Data

Additional file 2:

Summary of data in the degradome library. Detailed information of the raw data obtained from degradome sequencing and the distribution of the sequences.

Format: XLS Size: 14KB Download file

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Open Data

Additional file 3::

Targets mRNAs of the known miRNAs in wild soybean. Detailed information of the targets cleaved by the known miRNAs in this study.

Format: XLS Size: 30KB Download file

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Open Data

Additional file 4:

The distribution of the transcription regulators cleaved by known miRNAs. The percentage indicates proportion of the different transcription regulators out of the total number of transcription regulators for the known miRNAs. CCAAT, CCAAT-binding transcription factor; Myb, Myb family of transcription factors; SBP, SBP domain proteins; TCP, TCP family of transcription factors; SPT6, transcription elongation factor SPT6; WRC, growth regulating factor; AP2, AP2 domain protein; ARF, auxin response factor.

Format: TIFF Size: 2MB Download file

Open Data

Additional file 5:

The stemloop primers and qRT-PCR primers for the 10 selected miRNAs. Detailed information of stem loop primers and qRT-PCR primers.

Format: XLS Size: 16KB Download file

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Open Data