Table 7

GWAS results for trait heading date

SNP

Chr

Position

MAF

P-value

-log10(P)

R2 (%)

Effect

QTL

Reference QTL

Literature


SNP111

1H

128.14

0.19

0.0032

2.49

0.63

-2.51

QTL1_HD

HvFT3

[61]

SNP119

1H

138.92

0.23

0.0198

1.70

0.33


SNP129

2H

27.29

0.37

0.0099

2.00

0.38

SNP130

2H

28.44

0.36

0.0080

2.10

0. 39

-1.29

QTL2_HD

PpdH1

[62]

SNP133

2H

31.02

0.38

0.0280

1.55

0.39

[61]

SNP135

2H

33.73

0.10

0.0262

1.58

0.51


SNP142

2H

41.66

0.27

0.0096

2.02

0.40

SNP148

2H

53.53

0.34

0.0043

2.37

0.47

-1.37

QTL3_HD


SNP170

2H

63.53

0.32

0.0007

3.10

0.88

SNP174

2H

63.53

0.41

0.0011

2.96

0.68

SNP177

2H

63.53

0.32

0.0013

2.89

0.55

QTL4_HD

HvFT4/eam6

[61,63,64]

SNP173

2H

63.53

0.33

0.0033

2.48

0.53

SNP183

2H

66.83

0.44

0.0265

1.58

0.39

-2.32


SNP191

2H

71.12

0.44

0.0043

1.0061

0.0012

SNP196

2H

73.04

0.10

0.0061

2.21

0.65

QTL5_HD

eps2

[62]

SNP199

2H

73.75

0.14

0.0012

2.92

0. 49

2.53


SNP242

2H

115.78

0.39

0.0207

1.68

0. 54

-1.98

QTL6_HD


SNP284

3H

8.23

0.24

0.0111

1.95

0. 42

-1.45

QTL7_HD


SNP340

3H

59.89

0.35

0.0047

2.33

0. 38

1.80

QTL8_HD

HvGI

[61]


SNP520

4H

82.42

0.32

0.0198

1.70

0.47

-1.15

QTL9_HD


SNP543

4H

123.29

0.26

0.0024

2.62

0.67

-1.59

QTL10_HD


SNP559

5H

39.97

0.46

0.0146

1.84

0.32

-1.20

QTL11_HD

HvCO3

[65]


SNP630

5H

100.28

0.20

0.0203

1.69

0.58

SNP635

5H

102.06

0.13

0.0278

1.56

0. 34

-2.02

QTL12_HD

SNP636

5H

103.92

0.28

0.0278

1.56

0. 35

SNP639

5H

108.18

0.38

0.0236

1.63

0.53


SNP728

6H

28.39

0.43

0.0132

1.88

0.28

-1.43

QTL13_HD


SNP778

6H

60.23

0.49

0.0306

1.51

0. 37

-2.15

QTL14_HD


SNP829

6H

124.85

0.33

0.0281

1.55

0. 37

1.52

QTL15_HD


SNP854

7H

37.55

0.36

0.0060

2.22

0.57

2.50

QTL16_HD

HvFT1

[61,63]

SNP855

7H

38.32

0.35

0.0009

3.01

0.54


SNP875

7H

68.46

0.06

0.0180

1.74

0. 48

-2.33

QTL17_HD


SNP908

7H

84.92

0.35

0.0266

1.58

0. 37

1.66

QTL18_HD

HvCO1

[61,65]


SNP921

7H

104.78

0.35

0.0131

1.88

0.59

-1.79

QTL19_HD


Significant markers associated for heading date with K-model, corresponding MAF, P value of association, variance explained by marker (R2), effect of the most significant marker within the QTL interval, name of the QTL, and the reference QTL or gene from literature.

Pasam et al. BMC Plant Biology 2012 12:16   doi:10.1186/1471-2229-12-16

Open Data