Table 6

LD overview for the whole panel and the subgroups of two-rowed and six-rowed barley

Total pairs

% significant

Significant pairs

Mean r2

Pairs in complete LD

% of pairs in LD > 0.2

Mean of r2> 0.2


Whole panel

total

62222

39.4

24567

0.12

59

13.72

0.36

0-10 cM

10602

62.2

6554

0.20

59

33.70

0.42

11-20cM

8028

45.1

3626

0.10

0

10.21

0.29

21-50 cM

19066

38.3

7310

0.09

0

8.40

0.27

> 50 cM

24526

28.5

7077

0.08

0

4.00

0.25


2-rowed

total

48803

21.6

10544

0.18

94

23.74

0.43

0-10 cM

8183

50.0

4098

0.29

94

48.00

0.48

11-20cM

6244

29.9

1869

0.13

0

13.31

0.30

21-50 cM

15066

17.2

2601

0.12

0

9.59

0.28

> 50 cM

19310

10.2

1976

0.10

0

3.81

0.26


6-rowed

total

58356

20.2

11801

0.17

95

22.40

0.36

0-10 cM

9947

36.8

3661

0.24

95

40.37

0.43

11-20cM

7439

21.1

1569

0.14

0

18.26

0.27

21-50 cM

17768

16.9

3016

0.14

0

15.04

0.27

> 50 cM

23202

15.3

3555

0.13

0

12.14

0.25


LD statistics are given for the total number of locus pairs and for different marker linkage classes (for details see text).

Pasam et al. BMC Plant Biology 2012 12:16   doi:10.1186/1471-2229-12-16

Open Data