Table 11

GWAS results for trait crude protein content

SNP

Chr

Position

MAF

P-Value

-log10 (P)

R2 (%)

Effect

QTL

Reference QTL

Literature


SNP47

1H

55.49

0.50

0.0044

2.36

0.78

0.74

QTl1_CPC


SNP97

1H

114.84

0.25

0.0139

1.86

0.56

-0.85

QTL2_CPC


SNP136

2H

33.74

0.35

0.0310

1.51

0.45

0.39

QTL3_CPC

QPc.nab-2H.1;Qcp2a

[67,76]


SNP170

2H

63.53

0.32

0.0190

1.72

0.54

SNP173

2H

63.53

0.33

0.0115

1.94

0.62

0.72

QTL4_CPC

QGpc.StMo-2H.2

[67,75]

SNP174

2H

63.53

0.41

0.0055

2.26

0.74

SNP177

2H

63.53

0.32

0.0116

1.94

0.61


SNP200

2H

74.37

0.25

0.0071

2.15

0.72

-0.56

QTL5_CPC

SNP205

2H

78.03

0.40

0.0296

1.53

0.47


SNP226

2H

96.82

0.23

0.0056

2.25

0.66

-0.90

QTL6_CPC

QPc.nab-2H.1

[67]

SNP227

2H

96.82

0.19

0.0160

1.80

0.55


SNP244

2H

116.49

0.24

0.0242

1.62

0.48

-0.47

QTL7_CPC

QGpc.HaMo-2H.2

[75]


SNP272

2H

147.94

0.26

0.0103

1.99

0.62

-0.52

QTL8_CPC


SNP305

3H

47.09

0.16

0.0020

2.70

0.86

-1.466

QTL9_CPC

SNP322

3H

55.57

0.18

0.0093

2.03

0.64


SNP357

3H

72.26

0.32

0.0159

1.80

0.51

-0.47

QTL10_CPC


SNP401

3H

122.14

0.24

0.0062

2.21

0.68

0.60

QTL11_CPC

Qcp3a

[76]

SNP409

3H

130.82

0.41

0.0146

1.84

0.54


SNP518

4H

79.58

0.45

0.0006

3.22

1.09

-0.75

QTL12_CPC

QGpc.HaTR-4H.2

[77]


SNP531

4H

97.06

0.11

0.0281

1.55

0.45

0.79

SNP534

4H

101.62

0.16

0.0025

2.60

0.87

QTL13_CPC

QGpc.StMo-4H

[69]

SNP537

4H

108.70

0.21

0.0016

2.80

0.92


SNP616

5H

74.78

0.51

0.0107

1.97

0.54

-0.814

QTL14_CP

QGpc.HaMo-5H

[67,75]

SNP623

5H

85.93

0.16

0.0082

2.09

0.61


SNP643

5H

110.26

0.10

0.0055

2.26

0.73

1.52

QTL15_CPC

QGpc.DiMo-5H.2

[78]

SNP699

5H

171.66

0.11

0.0219

1.66

0.53

QTL16_CPC


SNP807

6H

83.89

0.25

0.0020

2.70

0.91

0.67

QTL17_CPC


SNP844

7H

12.42

0.10

0.0214

1.67

0.51

0.79

QTL18_CPC


SNP855

7H

38.32

0.35

0.0019

2.72

0.91

-0.86

QTL19_CPC

SNP860

7H

46.19

0.26

0.0314

1.50

0.45


SNP871

7H

61.32

0.24

0.0285

1.55

0.46

-0.50

QTL20_CPC

QPc.nab-7H

[67]


SNP904

7H

80.94

0.22

0.0036

2.44

0.85

-0.68

QTL21_CPC

QGpc.HaTR-7H

[77]


SNP925

7H

112.46

0.37

0.0210

1.68

0.49

0.41

QTL22_CPC


SNP930

7H

121.09

0.07

0.00001

4.73

1.57

1.54

QTL23_CPC


Significant markers associated for CPC with K-model, their MAF, P-value of association, variance explained by marker (R2), effect of the most significant marker within the QTL interval, name of the QTL, and the reference QTL or gene from literature.

Pasam et al. BMC Plant Biology 2012 12:16   doi:10.1186/1471-2229-12-16

Open Data