Research article
Identification and characterization of small non-coding RNAs from Chinese fir by high throughput sequencing
- † Equal contributors
1 Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China
2 Graduate School of the Chinese Academy of Sciences, Beijing, 100049, China
3 Bioinformatics Laboratory and National Laboratory of Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing, 100101, China
4 Medicinal Plant Cultivation Research Center, Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences & Peking Union Medical College, Haidian District, Beijing, 100193, China
BMC Plant Biology 2012, 12:146 doi:10.1186/1471-2229-12-146
Published: 15 August 2012Additional files
Additional file 1:
Common sRNAs matching perfectly to the Chinese fir mRNA transcriptome,A. thalianaandP. trichocarpagenomes.
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Additional file 2:
Conserved and novel miRNAs and tasiRNAs in Chinese fir.
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Additional file 3:
Precursor and primary sequences of conserved and novel miRNAs in Chinese fir.
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Additional file 4:
The hairpin structures of conserved and novel miRNAs predicted by MFOLD.
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Additional file 6:
Unigenes involved in the biogenesis and action of miRNAs in Chinese fir.
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Additional file 7:
Conserved and novel miRNA targets and their putative functions.
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Additional file 8:
Dicer-like proteins in Chinese fir.
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Additional file 9:
Phylogenetic trees of unigene18579 and unigene16720 with three model plant DCLs.
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Additional file 10:
Unigenes involved in the biogenesis and action of 24-nt rasiRNAs in Chinese fir.
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Additional file 11:
Unigenes involved in the biogenesis and action of tasiRNAs in Chinese fir.
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Additional file 13:
Primers for RT-PCR, qRT-PCR and 5' RACE.
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