Table 4

Positional candidate genes located in the LG 16 QTL interval for fruit flavanol content detected in the 'Royal Gala' × 'Braeburn' segregating population.

Identifier

Best Arabidopsis match

Possible function

Position (kb)

Gene ID


C2H2 TF

AT3G18290

RING finger and CHY zinc finger encoding BRUTUS (BTS), E3 ligase protein with metal ion binding and DNA binding domains, which negatively regulates the response to iron deficiency

1,000

MDP0000283750

C2H2 TF

AT1G68360

C2H2 and C2HC zinc finger family

1,020

MPD0000183099

MdMYB7

AT1G68320

MYB involved in regulation of phosphate starvation responses and gibberellic acid biosynthesis.

1,070

MDP0000659260

bHLH

AT1G25330

bHLH75, BR enhanced

1,080

MDP0000725991

COL

AT1G68520

Contans-like light regulation of secondary metabolites

1,220

MDP0000185616

bZIP

AT1G68640

HBP-1b(c1), BZIP - PAN is essential for AG activation in early flowering

1,380

MDP0000250967

MdG2L6

AT1G25550

Golden-like ARR18 MYB-related

1,440

MDP0000202657

MdAP2D36 TF

AT1G68840

Regulator of vac ATPase Rav2 is part of a complex that has been named 'regulator of the (H+)-ATPase of the vacuolar and endosomal membranes' (RAVE)

1,480

MDP0000939633

LAR1

MdLAR1

1,540

MDP0000376284

bHLH

AT1G68810

Known bHLH, no other function

1,550

MDP0000319726

bHLH

AT1G68920

bHLH49 Known bHLH, no other function

1,890

MDP0000154272

MdbHLH21

AT1G69010

BES1-INTERACTING MYC-LIKE PROTEIN 2

1,970

MDP0000149222


The approximate physical position on the apple linkage group (LG) is given in kilobases (kb) from the top of the LG calculated using assembled metacontigs of the apple genome sequence [20].

Chagné et al. BMC Plant Biology 2012 12:12   doi:10.1186/1471-2229-12-12

Open Data