Table 1

Transcriptional profiles of genes in Norton berry skin that are associated with defense pathways

ClusterA

Affymetrix ChipID

Genoscope ID

Function (VitisNet)B

KEGG

Pathway (VitisNet)


Up-regulation post véraison

1

VVTU11871_s_at

    GSVIVT00025506001

Polygalacturonase inhibiting protein PGIP1

PGIP

Defense

12

VVTU6661_at

    GSVIVT00005104001

Dirigent

Defense

18

VVTU13759_at

GSVIVT00038581001

Pathogenesis-related protein 1

PRP1

Defense

18

VVTU1755_at

    GSVIVT00033081001

Pathogenesis protein 10.1

Defense

18

VVTU39372_at

    GSVIVT00024739001

Dirigent protein

Defense

18

VVTU21514_x_at

    GSVIVT00024741001

Dirigent protein

Defense

18

VVTU8656_at

    GSVIVT00036870001

Epoxide hydrolase 2

3.3.2.10

Defense

13

VVTU10916_at

    GSVIVT00018587001

Ripening induced protein

Defense response

20

VVTU4789_at

    GSVIVT00007703001

NtPRp27 secretory protein

Defense response

1

VVTU10868_at

    GSVIVT00037825001

Disease resistance protein

Disease resistance

18

VVTU16881_at

    GSVIVT00028656001

Disease resistance protein (NBS-LRR class)

Disease resistance

20

VVTU7497_s_at

    GSVIVT00000261001

Disease resistance protein (TIR-NBS class)

Disease resistance

20

VVTU36452_at

    GSVIVT00038332001

TIR-NBS-LRR disease resistance

Disease resistance

12

VVTU40849_s_at

    GSVIVT00030517001

Major latex protein 22

Disease resistance

12

VVTU35326_at

    GSVIVT00002134001

Seed maturation protein PM41

Disease resistance

13

VVTU2601_at

    GSVIVT00018817001

PMR5 (POWDERY MILDEW RESISTANT 5)

Disease resistance

20

VVTU9483_at

    GSVIVT00000260001

TIR-NBS-LRR-TIR disease resistance protein

Disease resistance

20

VVTU2928_at

    GSVIVT00021517001

Hairpin inducing protein 1-like 9

Hypersensitive response

20

VVTU37592_at

    GSVIVT00023399001

Hairpin induced protein

Hypersensitive response

18

VVTU11329_at

    GSVIVT00030027001

SP1L1 (SPIRAL1-LIKE1)

Pathogen

18

VVTU1632_at

    GSVIVT00030524001

Bet v I allergen

Pathogenesis

Up-down-up regulation

19

VVTU4500_s_at

    GSVIVT00036464001

Viral-response family protein-like

Defense

19

VVTU7944_at

    GSVIVT00016484001

BREVIS RADIX 4

Disease resistance

Down-regulation post véraison

9

VVTU3745_s_at

    GSVIVT00024648001

Polygalacturonase inhibitor protein

PGIP

Defense

7

VVTU3256_at

    GSVIVT00024747001

Dirigent protein pDIR9

Defense

14

VVTU4542_at

    GSVIVT00016676001

Lachrymatory factor synthase

Defense

15

VVTU28352_at

    GSVIVT00024745001

Dirigent protein

Defense

14

VVTU2350_at

    GSVIVT00033031001

Epoxide hydrolase

3.3.2.10

Defense

17

VVTU2606_at

    GSVIVT00025834001

Epoxide hydrolase 2

3.3.2.10

Defense

3

VVTU34452_at

    GSVIVT00004842001

Disease resistance protein (TIR-NBS-LRR class)

Disease resistance

5

VVTU2751_s_at

    GSVIVT00033825001

Disease resistance protein

Disease resistance

7

VVTU20455_at

    GSVIVT00018767001

Receptor kinase TRKa

Disease resistance

7

VVTU21216_at

    GSVIVT00020681001

Disease resistance protein (NBS-LRR class)

Disease resistance

14

VVTU10907_at

    GSVIVT00011855001

HcrVf1 protein

Disease resistance

14

VVTU1732_at

    GSVIVT00025424001

Disease resistance responsive

Disease resistance

14

VVTU34204_s_at

    GSVIVT00025429001

Disease resistance responsive

Disease resistance

15

VVTU24464_at

    GSVIVT00026768001

Disease resistance protein (CC-NBS-LRR class)

Disease resistance

2

VVTU52_at

    GSVIVT00027396001

NDR1 (NON RACE-SPECIFIC DISEASE RESISTANCE)

Disease resistance

3

VVTU8917_at

    GSVIVT00033069001

Major allergen Pru ar 1

Disease resistance

5

VVTU29478_at

    GSVIVT00025399001

PMR5 (POWDERY MILDEW RESISTANT 5)

Disease resistance

9

VVTU5508_s_at

    GSVIVT00033067001

Major cherry allergen Pru av 1.0202

Disease resistance

14

VVTU30737_at

    GSVIVT00018816001

PMR5 (POWDERY MILDEW RESISTANT 5)

Disease resistance

3

VVTU2005_at

    GSVIVT00026172001

Hairpin induced 1

Hypersensitive response

5

VVTU10307_x_at

    GSVIVT00006738001

Hairpin induced 1

Hypersensitive response

14

VVTU14941_at

    GSVIVT00034176001

Hairpin induced 1

Hypersensitive response

15

VVTU16087_at

    GSVIVT00032401001

G protein protein gamma subunit (AGG2)

Pathogen defense

17

VVTU27983_at

    GSVIVT00023169001

Mlo3

K08472

Pathogen defense

17

VVTU7548_x_at

    GSVIVT00030529001

Bet v I allergen

Pathogenesis


A Expression profiling of each cluster is shown in Figure 1. B Function annotation and pathway assignment of each gene were based on VitisNet (http://vitis-dormancy.sdstate.org/pathways.cfm webcite)

Ali et al. BMC Plant Biology 2011 11:7   doi:10.1186/1471-2229-11-7

Open Data