Table 2

Allelic configuration of genes associated with responses to vernalization and photoperiod in the genotypes selected for expression analysis

Vernalization and photoperiod genes


Genotype

VRNH1a

VRNH2b

VRNH3

PPDH1e

PPDH2f

Promoterc

Intron 1d


SNP927

Indel 1

Indel 2


Plaisant

vrnh1

VRNH2

C

139

142

TC

PPDH1

ppdH2

Rebelle

vrnh1

VRNH2

C

135

146

AG

PPDH1

ppdH2

Arlois

vrnh1

VRNH2

C

139

142

TC

PPDH1

PPDH2

Hispanic

vrnh1

VRNH2

C

135

146

AG

PPDH1

PPDH2

SBCC106

VRNH1-6

VRNH2

C

139

142

TC

PPDH1

PPDH2

SBCC016

VRNH1-6

VRNH2

C

139

142

AG

PPDH1

PPDH2

SBCC058

VRNH1-4

VRNH2

C

139

142

TC

PPDH1

PPDH2

SBCC114

VRNH1-4

VRNH2

C

139

142

AG

PPDH1

PPDH2


a Alleles based on the size of intron 1 [12].

b Presence/absence of HvZCCT [15].

c Promoters identified previously [23].

d Alleles based on two SNPs in intron 1, as reported previously [20].

e Alleles based on SNP22 [25].

f Presence/absence of PPDH2 [13].

Casao et al. BMC Plant Biology 2011 11:164   doi:10.1186/1471-2229-11-164

Open Data