Table 1 |
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Predicted regulators of the Populus leaf transcriptional program. |
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Arabidopsis |
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Transcription factors |
Closest homologue |
Functional information |
Modules (genes) regulated |
|
|
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|
835874 |
ASIL1 (AT3G24490.1) |
trihelix family |
19/15 (111/91) |
|
834586 |
SIG1 (AT1G08540.1) |
subunit of chloroplast RNA polymerase, response to red and blue light |
9/8 (55/50) |
|
562448 |
K24M9.13(AT3G18640.1) |
zinc ion binding |
7/0 (60/0) |
|
287849 |
ATHB22 (AT4G24660.1) |
embryonic development ending in seed dormancy abscisic acid biosynthetic process, response to water deprivation, heat and osmotic |
6/0 (37/0) |
|
218677 |
ABA1 (AT5G67030.1) |
stress, xanthophylls biosynthetic process, sugar mediated signaling pathway, response to red light |
5/2 (32/12) |
|
420425 |
ATWHY3 (AT2G02740.2) |
defense response |
4/3 (25/21) |
|
740041 |
ATGRF2 (AT4G37740.1) |
leaf development |
4/0 (24/0) |
|
268609 |
HTA7 (AT5G27670.1) |
histone H2A protein, nucleosome assembly |
3/3 (14/14) |
|
639804 |
ATRBR1 (AT3G12280.1) |
regulates cell growth, nuclear division and stem cell maintenance |
3/5 (26/39) |
|
286321 |
SPL8 (AT1G02065.1) |
megasporogenesis, microsporogenesis |
2/0 (15/0) |
|
576309 |
T10K17.10 (AT3G57800.2) |
basic helix-loop-helix (bHLH) family |
2/1 (12/5) |
|
232345 |
HTA10 (AT1G51060.1) |
histone H2A protein, nucleosome assembly |
2/0 (9/0) |
|
566736 |
T6L1.10 (AT1G68920.3) |
basic helix-loop-helix (bHLH) family regulation of flower development, meristem |
1/1 (5/5) |
|
663774 |
YAB1 (AT2G45190.1) |
structural organization, abaxial cell fate specification |
1/0 (6/0) |
|
643213 |
IAA14 (AT4G14550.1) |
response to auxin stimulus, lateral root morphogenesis |
1/0 (7/0) |
|
281810 |
ATWRKY44 (AT2G37260.1) |
epidermal cell fate specification, seed coat development |
1/0 (5/0) |
|
643200 |
ATERF-9 (AT5G44210.1) |
ethylene mediated signaling pathway cinnamic acid biosynthetic process, |
1/0 (5/0) |
|
710397 |
ATMYB3 (AT1G22640.1) |
response to wounding, salt stress and abscisic and salicylic acid stimulus, negative regulation of metabolic process cell death, response to stress, ethylene |
1/0 (7/0) |
|
725612 |
ATEBP (AT3G16770.1) |
mediated signaling pathway, response to cytokinin stimulus, ethylene stimulus and other organism |
1/0 (12/0) |
|
594467 |
ETC1 (AT1G01380.1) |
involved in trichome and root hair patterning |
1/0 (6/0) |
|
|
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Populus v1.1 protein ID is given together with information on the closest homologue in Arabidopsis. The last column gives the number of modules (and in parenthesis the number of genes) regulated by the factor in our systems biology-based network and in the co-expression network, respectively. Transcription factors in our systems biology-based network that are not in the co-expression network are marked in bold. |
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Street et al. BMC Plant Biology 2011 11:13 doi:10.1186/1471-2229-11-13 |
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