Research article
A systems biology model of the regulatory network in Populus leaves reveals interacting regulators and conserved regulation
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* Corresponding author: Torgeir R Hvidsten torgeir.hvidsten@plantphys.umu.se
1 Umeå Plant Science Centre, Department of Plant Physiology, Umeå University, 901 87 Umeå, Sweden
2 Computational Life Science Cluster (CLiC), Umeå University, 901 87 Umeå, Sweden
BMC Plant Biology 2011, 11:13 doi:10.1186/1471-2229-11-13
Published: 13 January 2011Additional files
Additional file 1:
Gene expression data. The gene expression matrix used in this study.
Format: TXT Size: 4.3MB Download file
Additional file 2:
Transcriptional modules. All transcriptional modules in the library with over-represented function information.
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Additional file 3:
Transcriptional network. The inferred transcriptional network in text format (ready to be viewed in Cytoscape).
Format: SIF Size: 4KB Download file
Additional file 4:
Predicted regulatory mechanisms. The regulatory mechanisms predicted for each transcriptional module.
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Additional file 5:
Conserved transcriptional modules. Transcriptional modules that have conserved regulation in the Arabidopsis developmental data.
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Additional file 6:
Co-expression network. The inferred co-expression network based on pair-wise similarity (ready to be viewed in Cytoscape).
Format: SIF Size: 2KB Download file