Table 1

MiRNAs that showed genotype-specific expression

Normalized Expression Level (TPTM)*


Family

Mature miRNA

IT93K503-Control

IT93K503-Drought

CB46-Control

CB46-

Drought

Putative Target


vun_cand058

UUAAGCAGAAUGAUCAAAUUG

942

1546

3

0

hydroxyproline-rich glycoprotein

vun_cand048

UGGUCUCUAAACUUUAGAAAUGAA

746

263

0

2

vun_cand036

UCAGAGGAAACAACACUUGUAC

59

23

0

0

vun_cand045

CGUGCUGAGAAAGUUGCUUCU

52

79

14

5

VTC2 (vitamin c defective 2)

vun_cand053

GUAAUUGAGUUAAAAGGACUAUAU

43

6

0

2

cellulose synthase/transferase

vun_cand052

CGAGAGCCACUCGCCUAAGCGA

34

55

0

0

vun_cand055

CCACUGUAGUAGCUCUCGCUCA

30

40

0

0

vun_cand054

AGCAAGUUGAGGAUGGAGCUU

9

48

231

252

CKA1 (casein kinase alpha 1)

vun_cand014

UUCGGGAGUGAGAGCCAGUGA

3

0

56

5

UBP18 (ubiquitin-specific protease 18)


*TPTM: transcripts per ten million

Barrera-Figueroa et al. BMC Plant Biology 2011 11:127   doi:10.1186/1471-2229-11-127

Open Data