Table 1

52 genes are identified as maternally expressed by GenFrag analysis of cDNA-AFLP TDFs sizes and the selective nucleotides of the primer combinations used to generate the TDFs.

Gene

Protein encoded


At1g03070

Glutamate binding protein


At1g04700

Protein kinase family protein


At1g09390

GDSL-motif lipase/hydrolase family protein


At1g12420

ACT Domain Repeat 8 (ACR8)


At1g14880

Unknown protein


At1g16730

Unknown protein


At1g17840

ABC transporter family protein


At1g31820

Amino acid permease family protein


At1g54710

AtATG18


At1g55320

Ligase, similar to acyl-activating enzyme 17 (AAE17)


At1g61990

Mitochondrial transcription termination factor-related


At1g65820

Microsomal glutathione s-transferase, putative


At1g73680

Pathogen-responsive alpha-dioxygenase


At1g74450

Unknown protein


At1g75680

Arabidopsis thaliana glycosyl hydrolase 9B7 (ATGH9B7)


At2g16480

Unknown protein


At2g21130

Cyclophilin-like


At2g26620

Glycoside hydrolase family 28 protein


At2g31510

ARIADNE-like protein ARI7 (ARI7)


At2g32000

DNA topoisomerase family protein


At2g36020

Abscisic acid-responsive HVA22 family protein


At2g40810

Arabidopsis thaliana homolog of yeast autophagy 18c (ATG18c)


At2g45315

Unknown


At3g09840

Cell division cycle 48 (ATCDC48)


At3g12370

Mitochondrial RPL10


At3g20760

Nse4, component of Smc5/6 DNA repair complex


At3g22260

Ovarian tumor domain-like cysteine protease family protein


At3g24780

Uncharacterised conserved protein


At3g25530

Gamma-hydroxybutyrate dehydrogenase (ATGHBDH)


At3g29360

UDP-glucose 6-dehydrogenase


At3g47250

Unknown protein


At3g51280

Similar to male sterility MS5


At3g55250

Similar to calcium homeostasis regulator (CHoR1)


At3g57510

Arabidopsis endo-polygalacturonase 1 (ADPG1)


At3g59380

FARNESYLTRANSFERASE A (FTA)


At4g00180

YABBY gene family member


At4g01000

Ubiquitin family protein


At4g16830

Nuclear RNA-binding protein (RGGA)


At4g21270

AT KINESIN 1


At4g29450

Leucine-rich repeat protein kinase, putative


At4g33450

Myb domain protein 69 (AtMYB69)


At4g37530

Peroxidase, putative


At5g04895

ATP binding/helicase/nucleic acid binding protein


At5g16620

Pigment defective embryo (PDE120) chloroplast import (Tic40)


At5g17080

Cathepsin-related protein


At5g35730

EXS family protein/ERD1/XPR1/SYG1 family protein


At5g35737

Unknown protein


At5g38320

Unknown protein


At5g39510

VESICLE TRANSPORT V-SNARE 11 (VTI11)


At5g40390

Seed imbibition 1 (SIP1)


At5g61300

Unknown protein


At5g56310

ATHB5


52 maternally-expressed genes were identified from transcript-derived fragments generated by cDNA-AFLP of hybrid A. thaliana siliques. 93 TDFs were identified using GenFrag on the basis of their size and the selective nucleotides of the primer combinations used to generate them. These were matched to the 52 genes listed by BLASTN against A. thaliana genome (TAIR v.8). Nine genes which have been reported as preferentially endosperm-enriched (Day et al., 2008) are marked in bold.

McKeown et al. BMC Plant Biology 2011 11:113   doi:10.1186/1471-2229-11-113

Open Data