Table 3

Instances of micro-colinearity or conserved microsynteny between F. vesca and A. thaliana.

GenBank

Fosmid

Gene

Putative function

Blastx match

Blastx E value

Arabidopsis locus


EU024823

01I13

4

unknown protein

NP_568247

E = 8.3e-30

At5g11280

EU024823

01I13

5

OCP3 (OVEREXPRESSOR OF CATIONIC PEROXIDASE 3)

NP_196688

E = 4.0e-31

At5g11270

EU024823

01I13

6

HY5 (ELONGATED HYPOCOTYL 5); DNA binding/transcription factor

NP_568246

E = 2.3e-39

At5g11260

EU024823

01I13

7

CESA1 (CELLULOSE SYNTHASE 1); transferase, transferring glycosyl groups

NP_194967

E = 7.0e-160

At4g32410

EU024823

01I13

9

SHS1 (SODIUM HYPERSENSITIVE 1); binding/transporter

NP_194966

E = 1.5e-76

At4g32400

EU024826

08G19

2

floral homeotic protein AP3

NP_191002

E = 7.8e-25

At3g54340

EU024826

08G19

3

putative protein (embryo defective 1967)

NP_566998

E = 1.8e-39

At3g54350

EU024827

10B08

5

ATP-dependent DNA helicase, putative

NP_174109

E = 3.2e-38

At1g27880

EU024827

10B08

6

unknown protein

NP_174106

E = 6.4e-31

At1g27850

EU024831

13I24

3

xanthine/uracil permease family protein

NP_566384

E = 0

At3g10960

EU024831

13I24

4

protein phosphatase-related

NP_566383

E = 9.7e-53

At3g10940

EU024845

32L07

2

SMC2 (STRUCTURAL MAINTENANCE OF CHROMOSOMES 2) (AtSMC2-1) (AtSMC2-2)

NP_201047

E = 5e-83

NP_190330

E = 1.0e-80

At5g47460

EU024845

32L07

3

ATNOA1/ATNOS1/NOA1/NOS1 (nitrous oxide synthase 1)

NP_850666

E = 3.0e-34

At3g47450

EU024847

34E24

4

disease resistance protein (CC-NBS-LRR class), putative

NP_201491

NP_201492

E = 5.8e-56

E = 1.0e-54

At5g66900

At5g66910

EU024847

34E24

6

disease resistance protein (CC-NBS-LRR class), putative

NP_201491

NP_201492

E = 6.5e-63

E = 1.2e-59

At5g66900

At5g66910

EU024847

34E24

7

disease resistance protein (CC-NBS-LRR class), putative

NP_201491

NP_201492

E = 3.9e-90

E = 1.9e-89

At5g66900

At5g66910

EU024852

41O22

2

terpene synthase/cyclase family protein

NP_176361

E = 2.1e-55

At1g61680

EU024852

41O22

4

terpene synthase/cyclase family protein

NP_176361

E = 2.4e-56

At1g61680

EU024852

41O22

5

zinc ion binding

NP_176362

E = 8.0e-164

At1g61690

EU024856

48I08

1

protein kinase, putative

NP_190214

E = 2.5e-153

At3g46290

EU024856

48I08

2

protein kinase-related

NP_190213

E = 1.2e-25

At3g46280

EU024856

48I08

3

protein kinase-related

NP_190213

E = 6.6e-9

At3g46280

EU024860

51F10

1

EMB1138 (EMBRYO DEFECTIVE 1138); ATP binding/ATP-dependent helicase

NP_001031943

E = 7.0e-82

At5g26742

EU024860

51F10

3

unknown protein

NP_568485

E = 1.0e-8

At5g26731

EU024860

51F10

2

unknown protein

NP_187245

E = 8.2e-27

At3g05940

EU024860

51F10

4

unknown protein

NP_001118586

E = 1.3e-8

At3g05936

EU024863

52I20

1

oxidoreductase

NP_568767

E = 2.3e-25

At5g51880

EU024863

52I20

4

unknown protein

NP_568766

E = 1.7e-9

At5g51840

EU024863

52I20

2

AGL42 (AGAMOUS LIKE 42); transcription factor

NP_568952

E = 1.3e-22

At5g62165

EU024863

52I20

3

unknown protein

NP_201023

E = 6.9e-19

At5g62170

EU024863

52I20

6a

DNA binding/binding/protein binding/zinc ion binding

NP_567188

E = 1.2e-44

At4g00790

EU024863

52I20

6b

unknown protein

NP_567189

E = 0

At4g00800

EU024864

53J04

3

unknown protein

NP_564783

E = 8.5e-41

At1g61667

EU024864

53J04

6

terpene synthase/cyclase family protein

NP_176361

E = 1.2e-123

At1g61680

EU024871

76K13

4

PTAC6 (PLASTID TRANSCRIPTIONALLY ACTIVE6)

At: NP_564144

E = 2.6e-54

At1g21600

EU024871

76K13

6

wound-responsive family protein

At: NP_173580

E = 3.9e-14

At1g21610


Davis et al. BMC Plant Biology 2010 10:81   doi:10.1186/1471-2229-10-81

Open Data