Table 2

The list of reference genes for rice, defined in this and previous studies.

Gene

Probe Set Identifier

TIGR Identifier

Description

Mean

SD

CV

MV

Source


1

Os.10676.1.S1_a_at

LOC_Os06g11170.1

Nucleic acid binding protein

991.9

210.2

0.21

0.25

This study

2

Os.8912.1.S1_at

LOC_Os06g48970.1

Protein kinase

453.3

96.8

0.21

0.50

This study

3

Os.6.1.S1_a_at

LOC_Os11g43900.1

Tumor protein homolog

13137.5

3692.7

0.28

0.66

This study

Os.6.1.S1_x_at

Tumor protein homolog

13870.8

3368.4

0.24

This study

-

Os.12625.2.S1_x_at

No TIGR identifier

NA

18285.5

4473.7

0.24

-

This study

4

Os.12237.2.S1_a_at

LOC_Os06g47230.1

Expressed protein

18251.2

4481.0

0.25

0.30

This study

Os.12237.1.S1_a_at

Expressed protein

22019.9

5294.2

0.24

This study

5

Os.46231.2.S1_x_at

LOC_Os03g46770.1

RNA-binding protein

17176.5

4280.7

0.25

0.68

This study

Os.46231.1.S1_a_at

RNA-binding protein

22461.1

5636.0

0.25

This study

6

Os.6860.1.S1_at

LOC_Os11g21990.1

Eukaryotic initiation factor 5C

6969.6

1967.0

0.28

0.54

This study

7

Os.7945.1.S1_at

LOC_Os07g34589.1

Translation factor SUI1

24678.2

7030.8

0.28

0.61

This study

8

Os.12409.1.S1_at

LOC_Os07g02340.1

Expressed protein

11392.3

3488.8

0.31

0.44

This study

9

Os.37924.1.S1_x_at

LOC_Os11g26910.1

SKP1-like protein 1A

8488.5

2713.8

0.32

0.85

This study

10

Os.12382.1.S1_at

LOC_Os12g32950.1

Membrane protein

6550.4

2258.4

0.34

0.59

This study

11

Os.8092.1.S1_at

LOC_Os05g48960.1

Splicing factor U2af

4051.7

1403.7

0.35

0.49

This study

12

Os.12151.1.S1_at

LOC_Os06g43650.1

Expressed protein

4504.6

1581.7

0.35

0.39

This study

13

AFFX-Os-actin-3_s_at

LOC_Os03g50890.1

Actin

9556.3

5719.5

0.60

0.97

[7]; commonly used reference gene

14

Os.11355.1.S1_at

LOC_Os05g36290.1

Actin1

1842.8

1471.3

0.80

0.79

[7]; commonly used reference gene

15

Os.9504.1.S1_at

LOC_Os07g38730.1

Alpha-tubulin

5400.3

3466.6

0.64

0.76

[7]; commonly used reference gene

16

Os.10139.1.S1_s_at

LOC_Os06g46770.1

Polyubiquitin

15085.3

6524.3

0.43

0.47

[7]; commonly used reference gene

17

Os.7899.1.S1_at

LOC_Os02g16040.1

Ubiquitin

2598.8

1135.4

0.44

0.63

[20]; commonly used reference gene

18

Os.22781.1.S1_at

LOC_Os02g38920.1

GAPDH

11640.8

8346.8

0.72

1.09

[20]; commonly used reference gene

19

Os.10158.1.S1_at

LOC_Os07g43730.1

EF1

5619.9

2549.3

0.45

0.52

[20]; commonly used reference gene

20

Os.10385.1.S1_at

LOC_Os03g55270.1

TIP41-like

482.7

274.5

0.57

0.42

[7]

21

Os.5500.1.S1_s_at

LOC_Os08g23180.1

Arabinogalactan protein

4957.5

3114.1

0.63

0.90

[22]

22

Os.12835.2.S1_a_at

LOC_Os07g42300.1

EF1d

6073.3

3003.7

0.49

0.82

[22]

23

Os.19618.1.S1_at

LOC_Os01g39260.1

FtsH protease

1487.4

725.5

0.49

0.57

[22]

24

Os.7952.1.S1_at

LOC_Os03g25980.1

Nucleotide tract-binding protein

607.8

241.8

0.40

0.56

(Orthologue) [10]

25

Os.22806.1.S1_s_at

LOC_Os02g46510.1

AP-2 complex subunit

1550.2

744.5

0.48

0.64

(Orthologue) [10]

26

Os.13910.1.S1_at

LOC_Os03g21210.1

endo-1,4-beta-glucanase

900.7

1063.3

1.18

0.72

(Orthologue) [10]


The gene number, Affymetrix probeset identifiers, TIGR identifiers, gene descriptions (TIGR), mean expression and standard deviation (SD) based on GC-RMA normalised data. The coefficient of variance (CV) is also indicated for each probeset/gene. The M values calculated based the QRT-PCR data; using geNORM software is also shown. Source indicates the studies from which these genes were selected.

Narsai et al. BMC Plant Biology 2010 10:56   doi:10.1186/1471-2229-10-56

Open Data