Table 4

Distribution of annotated ESTs among MIPS functional categories.

Functional category

RindPdigS

RindPdig24

A. thaliana


Metabolism

37.6

27.7

17.3

Energy

3.6

5.5

1.6

Storage protein

0.0

0.1

0.2

Cell cycle and DNA processing

2.4

4.2

5.3

Transcription

1.8

6.0

9.4

Protein synthesis

4.2

9.6

4.7

Protein fate (folding, modification, destination)

12.7

14.7

10.9

Protein with binding function or cofactor requirement

26.7

32.3

24.7

Regulation of metabolism and protein function

0.6

2.9

2.1

Cellular transport, transport facilitation and transport routes

20.0

13.7

8.5

Cellular communication/Signal transduction mechanism

2.4

3.5

4.5

Cell rescue, defense and virulence

12.7

10.5

5.0

Interaction with the environment

14.5

10.5

5.8

Systemic interaction with the environment

6.1

3.3

2.7

Transposable elements, viral and plasmid proteins

0.0

0.1

0.3

Cell fate

1.8

1.9

1.6

Development (systemic)

3.0

3.8

3.7

Biogenesis of cellular components

2.4

4.5

5.5

Cell type differentiation

1.2

0.9

0.8

Tissue differentiation

0.6

0.9

0.3

Organ differentiation

1.2

1.0

0.9

Subcellular localization

46.7

50.5

46.6

Cell type localization

0.6

0.1

0.5

Tissue localization

0.6

0.3

0.1

Organ localization

1.2

0.1

0.1

Unclassified proteins

18.8

16.0

28.1


Gonz├ílez-Candelas et al. BMC Plant Biology 2010 10:194   doi:10.1186/1471-2229-10-194

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