Database
SoyDB: a knowledge database of soybean transcription factors
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* Corresponding author: Jianlin Cheng chengji@missouri.edu
1 Computer Science Department, University of Missouri, Columbia, MO 65211, USA
2 Christopher S Bond Life Sciences Center, University of Missouri, Columbia, MO 65211, USA
3 Division of Plant Sciences, National Center for Soybean Biotechnology, Christopher S Bond Life Sciences Center, University of Missouri, Columbia, MO 65211, USA
4 Informatics Institute, University of Missouri, Columbia, MO 65211, USA
BMC Plant Biology 2010, 10:14 doi:10.1186/1471-2229-10-14
Published: 18 January 2010Additional files
Additional file 1:
Figure S1 The SoyDB web page showing a list of transcription factor families. TF families are shown with their family ID, family name, and number of sequences within the family. Click on the family ID can further view the detailed information about the family as shown in Figure 4, and click on the number of sequences can open the webpage showing all the transcription factors within the family, as shown in Figure 5.
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Additional file 2:
Figure S2 The PSI-BLAST search web page. Users can paste or type in a query amino acid sequence and specify PSI-BLAST parameters on the web page. Click on the "Run" button will execute PSI-BLAST.
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Additional file 3:
Figure S3 The result web page of PSI-BLAST search. PSI-BLAST result page shows the hit TF sequence ID, and the PSI-BLAST score and E-value. The hits are listed in a decreasing order of the PSI-BLAST score. Click on the sequence ID can open the web page showing detailed TF information, as shown in Figure 3.
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Additional file 4:
Figure S4 The HMM family classification web page. Users can paste or type in a query amino acid sequence. Click on the "Predict" button will execute family classification by HMM.
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