Table 1

Size and boundary nucleotide sequences of exons and introns of the porcine Dab1 and Fyn genes

Dab1


Exon number

Exon (nt)

5' junction

Intron (nt)

3' junction


2 (from start codon)

67

AGAAAG...

?

...agGTCAGG

3

140

CTCAAGgt...

7978

...agGGCGTT

4

99

ACAGGGgt...

67718

...agGCTCTT

5

132

CAGGCGgt...

583

...agGCTGAA

6

120

TATCAGgt...

456

...agACAATT

7 (exists in sDab1)

39

TACCAGgt...

1561

...agTACATT

8 (exists in sDab1)

66

TATCAGgt...

7729

...agGTTCCC

9

60

GTAAGTgt...

28324

...agAACGGC

10 (exists in sDab1-Li)

51

ACGCCGgt...

92

...agAACAGA

11 (exists in sDab1-Li)

48

ACAAAGgt...

4910

...agGCTGTG

12

63

CCCCCCgt...

2345

...agACTCCT

13

109

CCTCAGgt...

8585

...agGTTATG

14

549

ACTCACgt...

4646

...agCTCCCA

15

128

GAAGCCgt...

347

...agCCTGAT

16 (stop codon of sDab1)

111

GTCTGGgt...

13941

...agGAGCTG

17 (stop codon of sDab1-Li)

45


Fyn


Exon number

Exon (nt)

5' junction

Intron (nt)

3' junction

2 (from start codon)

247

GAACAGgt...

3850

...agGAGTGA

3

97

CAGCTCgt...

7851

...agGGAAGG

4

99

AGAAGAgt...

3193

...agGTGGTA

5

104

CCAAAGgt...

976

...agGTGCCT

6

150

ACTCAGgt...

3179

...tcAGAGAG

7 (exists in sFyn-B)

165

GGATGGgt...

527

...agAGAAAG

8 (exists in sFyn-T)

156

GGCTTGgt...

3094

...agGTACCT

9

180

ATAAAGgt...

1547

...agGAAGCT

10

77

GCACAGgt...

90

...agGTTGCT

11

154

GACAAGgt...

19971

...agGTGCAA

12

133

ACCCAGgt...

10569

...agGCATGA

13 (till stop codon)

209


Note: "?" means intron was not found by megaBLAST.

Long et al. BMC Neuroscience 2011 12:17   doi:10.1186/1471-2202-12-17

Open Data