Table 1

Call rates for seven different viral RNAs using WTA method.

Whole Transcriptome Amplification


Viral family

Name of virus

Number of fragments (size)

Strand

Call rate (%)


Average ± SD

Range (Min-Max)


Coronaviridae

SARS-CoV1

1 (29751)

S +

99.1 ± 0.3

(98.9–99.3)

Flaviviridae

Yellow fever

1 (10862)

S +

74.4 ± 2.5

(72.6–76.2)

Dengue type 2

1 (10703)

S +

59.4 ± 10.7

(51.8–66.9)

Rhabdoviridae

VSV2

1 (11161)

S -

96.8 ± 2.1

(95.3–98.3)

CVS3

1 (11966)

S -

73.6 ± 1.1

(72.8–74.3)

Bunyaviridae

Rift valley fever virus

3 (12181: 6606*, 3885, 1690)

S +/-

100 ± 0

(100–100)

Orthomyxoviridae

Influenza virus type B (B/Yamagata/166/98)

8 (14289: 2328*, 2352, 2273, 1843,1793, 1504, 1151, 1045)

S -

72.3 ± 9.7

(65.4–79.1)


1. Severe Acute Respiratory Syndrome Coronavirus

2. Vesicular Stomatitis Virus

3. Rabies virus: Challenge Virus Strain

S+: Positive RNA genome; S-: Negative RNA genome; S+/-: Negative or ambisense RNA genome

* Genome segment partially tiled on this chip

Berthet et al. BMC Molecular Biology 2008 9:77   doi:10.1186/1471-2199-9-77

Open Data