|
Candidate housekeeping genes tested in this study. |
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| Gene symbol |
Homologous to |
Description of trace archive |
Accession number |
Oligonucleotides – Forward – Reverse |
E (%) |
R2 |
Tm product |
PCR product length (bp) |
|
|
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| ACT |
Actin |
KY0AIB94YO18AHM1 |
1927036313 |
CCCAGATCATGTTCGAGACGTT CACGCCGTCACCCGAGTC |
91 |
1.000 |
87.80 |
119 |
| ARP2.1 |
p34-arc subunit of the actin-related protein complex ARP2/3 |
KY0AFIPA38YJ23RM1 |
1927195696 |
GAAGGAGTTCTGCCGGGAAG ACAAAGCAGCAACGCAGAGA |
98 |
0.994 |
84.50 |
121 |
| ARP2.2 |
ARP2 subunit of the actin-related protein complex ARP2/3 |
KY0AIB269YJ02AHM1 |
1929831232 |
GAAGAAGTTCAAGCTCAACATCGA CCGCACCCCCAATGAAA |
104 |
0.998 |
80.90 |
68 |
| CYC |
Cyclophilin |
KY0ADB29YF06FM1 |
1291599781 |
AGACGGCGGTGCAAGTAGG GTGAGTCACGGCTGCTTTTATG |
92 |
0.997 |
84.80 |
101 |
| Dyn |
Dynein light chain protein |
KY0AEB344YP09RM1 |
1306215256 |
GGAACAAAGCATGGTGACAACA CGCGTGCCTATCCAAGCT |
100 |
0.999 |
81.20 |
65 |
| EF1alpha |
Translation elongation factor 1 alpha |
KY0AEC342YI10RM1 |
1291335619 |
GCAAGGGCCTCAGCTCTG ACAAGCCGTCTGGGTATATGTTAGC |
92 |
0.997 |
81.50 |
160 |
| G6PD |
Glucose 6 phosphate dehydrogenase |
KY0AEF243YN02RM1 |
1299896231 |
GTGAGGATGTTCAGGTCCCAG GTGGAAGACCCGGTGAGGT |
90 |
0.996 |
84.50 |
101 |
| IF2A |
Translation initiation factor eIF2 alpha |
KY0AIB251YB11AHM1 |
1918199315 |
GCGGTACGTGATGGACACC CCCCCGACTCGATGATCTTT |
94 |
0.991 |
84.80 |
101 |
| IF4E |
Translation intiation factor eIF4E |
KY0ADA42YE14FM1 |
1291478318 |
TCGCGATTCGAGGTTTGAGTA CAAACGCTGCGGCAGC |
100 |
0.991 |
82.40 |
71 |
| R26S |
Ribosomal protein 26S |
KY0AEC624YL15RM1 |
1300144654 |
GCTAGGCTTGCGTTTGTGTG GGCGAGACAGAAAGATTCCG |
93 |
0.995 |
85.40 |
101 |
| TUA |
Alpha tubulin |
KY0AEC614YE14RM1 |
1299935912 |
TTTGAGGAGTTTCGTCGGAGAT CACACAGCGCAAAACGGC |
92 |
0.999 |
83 |
140 |
| UBCE |
Ubiquitin conjugating enzyme |
KY0AFIPA87YJ24RM1 |
1917772478 |
AACAATGGCCTTTGCGAAAA GCGTACGTCTTGAAGCCCAG |
95 |
0.997 |
84.50 |
101 |
| UBQ |
Ubiquitin C |
KY0AEC576YH18FM1 |
1306241438 |
CAACGCCCATGATTGTTCAC GATTATTCCCATCCACGGCA |
100 |
0.997 |
82.70 |
101 |
| mN |
Intron amplification |
KY0AEF302YN21FM1 |
1306150449 |
TCATTTTTCATGTGGAGGTCTCTG GCCAAACAAACAACAACCCTC |
83 |
0.981 |
84.80 |
93 |
|
The identity of the sequences (gene name, function) is indicated in the left part of the table. The trace corresponds to trace archive at NCBI http:/ / www.ncbi.nlm.nih.gov/ Traces/ trace.cgi?cmd=retrieve&val=species_ code%3D%22ECTOCARPUS+SILICULOSUS%22. Parameters on the corresponding amplified product (oligonucleotides, amplicon Tm and size, reaction efficiency and reliability) are indicated in the right part. | ||||||||
Le Bail et al. BMC Molecular Biology 2008 9:75 doi:10.1186/1471-2199-9-75 |
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