|
GlaI activity on methylated oligonucleotide duplexes |
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| Oligonucleotide duplex |
The central part of structure of a duplex |
Relative enzyme's activity (%) and standard error |
|
|
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| G7*/G8 |
5'-TTTTCGMGMTGACG-3' |
100 ± 5 |
| 3'-AAAAGMGMGACTGC-5' |
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| G8*/G7 |
5'-CGTCAGMGMGAAAA-3' |
97 ± 5 |
| 3'-GCAGTMGMGCTTTT-5' |
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| G3*/G8 |
5'-TTTTCGMGCTGACG-3' |
28 ± 2 |
| 3'-AAAAGMGMGACTGC-5' |
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| G8*/G3 |
5'-CGTCAGMGMGAAAA-3' |
40 ± 2 |
| 3'-GCAGTCGMGCTTTT-5' |
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| G4*/G7 |
5'-CGTCAGMGCGAAAA-3' |
31 ± 2 |
| 3'-GCAGTMGMGCTTTT-5' |
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| G7*/G4 |
5'-TTTTCGMGMTGACG-3' |
36 ± 2 |
| 3'-AAAAGCGMGACTGC-5' |
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| G11*/G12 |
5'-TTTTCAMGMTGACG-3' |
61 ± 3 |
| 3'-AAAAGTGMGACTGC-5' |
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| G12*/G11 |
5'-CGTCAGMGTGAAAA-3' |
60 ± 3 |
| 3'-GCAGTMGMACTTTT-5' |
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| G6*/G7 |
5'-CGTCAGCGMGAAAA-3' |
16 ± 1 |
| 3'-GCAGTMGMGCTTTT-5' |
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| G7*/G6 |
5'-TTTTCGMGMTGACG-3' |
17 ± 1 |
| 3'-AAAAGMGCGACTGC-5' |
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| G5*/G8 |
5'-TTTTCGCGMTGACG-3' |
17 ± 1 |
| 3'-AAAAGMGMGACTGC-5' |
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| G8*/G5 |
5'-CGTCAGMGMGAAAA-3' |
17 ± 1 |
| 3'-GCAGTMGCGCTTTT-5' |
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| G13*/G14 |
5'-TTTTCGTGMTGACG-3' |
21 ± 1 |
| 3'-AAAAGMAMGACTGC-5' |
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| G14*/G13 |
5'-CGTCAGMAMGAAAA-3' |
16 ± 1 |
| 3'-GCAGTMGTGCTTTT-5' |
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| G20*/G21 |
5'-TTTTCGMAMTGACG-3' |
17 ± 1 |
| 3'-AAAAGMGTGACTGC-5' |
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| G21*/G20 |
5'-CGTCAGTGMGAAAA-3' |
25 ± 1 |
| 3'-GCAGTMAMGCTTTT-5' |
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| G3*/G4 |
5'-TTTTCGMGCTGACG-3' |
5 ± 1 |
| 3'-AAAAGCGMGACTGC-5' |
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| G4*/G3 |
5'-CGTCAGMGCGAAAA-3' |
6 ± 1 |
| 3'-GCAGTCGMGCTTTT-5' |
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| G12*/G17 |
5'-CGTCAGMGTGAAAA-3' |
28 ± 1 |
| 3'-GCAGTCGMACTTTT-5' |
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| G17*/G12 |
5'-TTTTCAMGCTGACG-3' |
13 ± 1 |
| 3'-AAAAGTGMGACTGC-5' |
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| G15*/G16 |
5'-TTTTCAMGTTGACG-3' |
26 ± 1 |
| 3'-AAAAGTGMAACTGC-5' |
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| G16*/G15 |
5'-CGTCAAMGTGAAAA-3' |
23 ± 1 |
| 3'-GCAGTTGMACTTTT-5' |
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| G18*/G19 |
5'-TTTTCGMGTTGACG-3' |
12 ± 1 |
| 3'-AAAAGCGMAACTGC-5' |
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| G19*/G18 |
5'-CGTCAAMGCGAAAA-3' |
14 ± 1 |
| 3'-GCAGTTGMGCTTTT-5' |
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| G7*/G2 |
5'-TTTTCGMGMTGACG-3' |
< 1 |
| 3'-AAAAGCGCGACTGC-5' |
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| G2*/G7 |
5'-CGTCAGCGCGAAAA-3' |
< 1 |
| 3'-GCAGTMGMGCTTTT-5' |
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| G13*/G35 |
5'-TTTTCGTGMTGACG-3' |
< 1 |
| 3'-AAAAGMACGACTGC-5' |
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| G35*/G13 |
5'-CGTCAGCAMGAAAA-3' |
< 1 |
| 3'-GCAGTMGTGCTTTT-5' |
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| G5*/G6 |
5'-TTTTCGCGMTGACG-3' |
< 1 |
| 3'-AAAAGMGCGACTGC-5' |
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| G6*/G5 |
5'-CGTCAGCGMGAAAA-3' |
< 1 |
| 3'-GCAGTMGCGCTTTT-5' |
||
| G12*/G32 |
5'-CGTCAGMGTGAAAA-3' |
< 1 |
| 3'-GCAGTMGCACTTTT-5' |
||
| G32*/G12 |
5'-TTTTCACGMTGACG-3' |
< 1 |
| 3'-AAAAGTGMGACTGC-5' |
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| G33*/G34 |
5'-TTTTCATGMTGACG-3' |
< 1 |
| 3'-AAAAGTAMGACTGC-5' |
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| G34*/G3 |
5'-CGTCAGMATGAAAA-3' |
< 1 |
| 3'-GCAGTMGTACTTTT-5' |
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| G13*/36 |
5'-TTTTCGTGMTGACG-3' |
< 1 |
| 3'-AAAAGCAMGACTGC-5' |
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| G36*/13 |
5'-CGTCAGMACGAAAA-3' |
< 1 |
| 3'-GCAGTMGTGCTTTT-5' |
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| G3*/G6 |
5'-TTTTCGMGCTGACG-3' |
< 1 |
| 3'-AAAAGMGCGACTGC-5' |
||
| G6*/G3 |
5'-CGTCAGCGMGAAAA-3' |
< 1 |
| 3'-GCAGTCGMGCTTTT-5' |
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| G4*/G5 |
5'-CGTCAGMGCGAAAA-3' |
< 1 |
| 3'-GCAGTMGCGCTTTT-5' |
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| G5*/G4 |
5'-TTTTCGCGMTGACG-3' |
< 1 |
| 3'-AAAAGCGMGACTGC-5' |
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| G22*/G23 |
5'-TTTTCMMGMTGACG-3' |
< 1 |
| 3'-AAAAGGGMGACTGC-5' |
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| G23*/G22 |
5'-CGTCAGMGGGAAAA-3' |
< 1 |
| 3'-GCAGTMGMMCTTTT-5' |
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| G24*/G25 |
5'-TTTTCGGGMTGACG-3' |
< 1 |
| 3'-AAAAGMMMGACTGC-5' |
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| G25*/G24 |
5'-CGTCAGMMMGAAAA-3' |
< 1 |
| 3'-GCAGTMGGGCTTTT-5' |
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| G28*/G29 |
5'-TTTTCTMGMTGACG-3' |
< 1 |
| 3'-AAAAGAGMGACTGC-5' |
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| G29*/G28 |
5'-CGTCAGMGAGAAAA-3' |
< 1 |
| 3'-GCAGTMGMTCTTTT-5' |
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| G30*/G31 |
5'-TTTTCGAGMTGACG-3' |
< 1 |
| 3'-AAAAGMTMGACTGC-5' |
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| G31*/G30 |
5'-CGTCAGMTMGAAAA-3' |
< 1 |
| 3'-GCAGTMGAGCTTTT-5' |
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| G37*/G38 |
5'-TTTTCTMGATGACG-3' |
< 1 |
| 3'-AAAAGAGMTACTGC-5' |
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| G38*/G37 |
5'-CGTCATMGAGAAAA-3' |
< 1 |
| 3'-GCAGTAGMTCTTTT-5' |
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| G26*/G23 |
5'-TTTTCCMGMTGACG-3' |
< 1 |
| 3'-AAAAGGGMGACTGC-5' |
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| G23*/G26 |
5'-CGTCAGMGGGAAAA-3' |
< 1 |
| 3'-GCAGTMGMCCTTTT-5' |
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| G27*/G24 |
5'-CGTCAGMCMGAAAA-3' |
< 1 |
| 3'-GCAGTMGGGCTTTT-5' |
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| G24*/G27 |
5'-TTTTCGGGMTGACG-3' |
< 1 |
| 3'-AAAAGMCMGACTGC-5' |
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Tarasova et al. BMC Molecular Biology 2008 9:7 doi:10.1186/1471-2199-9-7 |
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