Small RNAs and the regulation of cis-natural antisense transcripts in Arabidopsis

doi:10.1186/1471-2199-9-6

BMC Molecular Biology
Volume 9

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Research article

Small RNAs and the regulation of cis-natural antisense transcripts in Arabidopsis

Hailing Jin¹ , Vladimir Vacic² , Thomas Girke³ , Stefano Lonardi⁴ and Jian-Kang Zhu³

¹Departments of Plant Pathology & Microbiology, Center for Plant Cell Biology and Institute for Integrative Genome Biology, University of California, Riverside, CA 92521, USA

²Computer Science and Engineering, University of California, Riverside, CA 92521, USA

³Botany and Plant Sciences, Center for Plant Cell Biology and Institute for Integrative Genome Biology, University of California, Riverside, CA 92521, USA

⁴Computer Science and Engineering, Center for Plant Cell Biology and Institute for Integrative Genome Biology, University of California, Riverside, CA 92521, USA

author email corresponding author email

BMC Molecular Biology 2008, 9:6doi:10.1186/1471-2199-9-6


Published:	14 January 2008

Additional files

Additional file 1:

All cis-NATs in Arabidopsis.

Format: XLS Size: 441KB Download file

This file can be viewed with: Microsoft Excel Viewer

Additional file 2:

Summary of AtGenExpress experimental dataset.

Format: XLS Size: 59KB Download file

This file can be viewed with: Microsoft Excel Viewer

Additional file 3:

NATs with inverse expression patterns.

Format: XLS Size: 601KB Download file

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Additional file 4:

Small RNAs with 100% sequence match to the overlapping regions of cis-NATs.

Format: XLS Size: 118KB Download file

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Additional file 5:

Small RNAs with 100% sequence match to the full-length cis-NATs.

Format: XLS Size: 524KB Download file

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Additional file 6:

List of putative nat-siRNAs that have the potential to target multiple members in a gene family.

Format: XLS Size: 44KB Download file

This file can be viewed with: Microsoft Excel Viewer

Additional file 7:

Full dataset of the detailed GO analysis of NAT gene pairs.

Format: XLS Size: 141KB Download file

This file can be viewed with: Microsoft Excel Viewer