Table 6 |
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|
List of all candidate motifs found for both RBPs, TcUBP1 and TcRBP3. |
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|
% of mRNAs |
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|
|
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|
RNA motifs |
EXP |
dbEST |
Δ |
|
|
|||
|
UBP1m |
70.27 |
9.74 |
61 |
|
UBP1-m2 |
56.76 |
20.26 |
36 |
|
UBP1-m3 |
51.35 |
15.52 |
36 |
|
UBP1-m4 |
35.14 |
1.22 |
34 |
|
UBP1-m5 |
37.84 |
5.32 |
33 |
|
UBP1-m6 |
43.24 |
12.06 |
31 |
|
UBP1-m7 |
43.24 |
17.39 |
26 |
|
UBP1-m8 |
51.35 |
25.66 |
26 |
|
UBP1-m9 |
43.24 |
17.78 |
25 |
|
UBP1-m10 |
37.84 |
14.96 |
23 |
|
UBP1-m11 |
32.43 |
10.17 |
22 |
|
UBP1-m12 |
24.32 |
3.39 |
21 |
|
UBP1-m13 |
27.03 |
6.60 |
20 |
|
UBP1-m14 |
27.03 |
8.18 |
19 |
|
UBP1-m15 |
27.03 |
8.52 |
19 |
|
UBP1-m16 |
8.11 |
0.31 |
8 |
|
|
|||
|
RBP3m |
70.59 |
2.23 |
68 |
|
RBP3-m2 |
70.59 |
8.69 |
62 |
|
RBP3-m3 |
88.24 |
29.09 |
59 |
|
RBP3-m4 |
82.35 |
26.02 |
56 |
|
RBP3-m5 |
58.82 |
6.83 |
52 |
|
RBP3-m6 |
47.06 |
5.76 |
41 |
|
RBP3-m7 |
41.18 |
2.81 |
38 |
|
RBP3-m8 |
41.18 |
4.05 |
37 |
|
RBP3-m9 |
35.29 |
2.61 |
33 |
|
RBP3-m10 |
29.41 |
0.13 |
29 |
|
RBP3-m11 |
29.41 |
1.20 |
28 |
|
RBP3-m12 |
23.53 |
0.07 |
23 |
|
RBP3-m13 |
17.65 |
0.04 |
18 |
|
RBP3-m14 |
17.65 |
0.48 |
17 |
|
|
|||
|
Percentage of transcripts bearing the motif in the experimental dataset and trypanosome EST database are shown. Δ, indicates the difference between both percentages. |
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|
Noé et al. BMC Molecular Biology 2008 9:107 doi:10.1186/1471-2199-9-107 |
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