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ChIPed DNA sequences that correspond to two potential target genes. |
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| p63 Binding Fragment |
Chromosome Number |
Nearest Gene |
Location |
Description |
Accession Number |
Gene Ontology |
|
|
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| A8(a) |
19q13.32 |
ZNF541 |
3' end |
Zinc finger protein 541 |
NM_032255 |
Transcription |
| A8(b) |
19q13.32 |
NAPA* |
5' end |
N-ethylmaleimide-sensitive factor protein |
NM_003827 |
Transport |
| B1(a) |
6q23.3 |
FLJ46906 |
3' end |
Hypothetical gene supported by Ak128874; BC071813 |
XM_928441 |
Unknown |
| B1(b) |
6q23.3 |
CCDC28A |
5' end |
Coiled-coil domain containing 28A |
NM_015439 |
Unknown |
| B3(a) |
12q22 |
LOC642961 |
3' end |
Hypothetical protein |
XM_931709 |
Unknown |
| B3(b) |
12q22 |
MRPL42 |
5' end |
Mitochondrial ribosomal protein L42 |
NM_014050 |
Protein biosynthesis |
| C7(a) |
20p12.1 |
WFDC12 |
NL |
WAP four-disulfide core domain 12 |
NM_080869 |
Protease inhibitor |
| C7(b) |
20p12.1 |
LOC613266 |
NL |
Hypothetical LOC613266 |
ND |
Unknown |
| D6(a) |
1q32.1 |
Clorf116* |
NL |
Chromosome 1 open reading frame 116 |
NM_023938 |
Unknown |
| D6(b) |
1q32.1 |
LOC653098 |
5' end |
Similar to chromosome 1 open reading frame |
XM_925981 |
Unknown |
| E10(a) |
1p21-p13 |
CSF1 |
3' end |
Colony stimulating factor 1 |
NM_000757 |
Cell proliferation/differentiation |
| E10(b) |
1p13.2 |
AHCYL1 |
5' end |
S-adenosyl homocystein hydrolase-like 1 |
NM_006621 |
Adenoyslhomocyteinase |
| G5(a) |
21q22.11 |
LOC728598 |
5' end |
Similar to oligodendrocyte transcription factor 1 |
XM_001127883 |
Transcription |
| G5(b) |
21q22.11 |
LOC728409 |
3' end |
Hypothetical protein |
XM_001128368 |
Unknown |
| G10(a) |
13q34 |
LOC122258 |
5' end |
Hypothetical protein |
NM_145248 |
Unknown |
| G10(b) |
13q34 |
LOC400163 |
5' end |
Hypothetical protein supported by BC034786 |
ND |
Unknown |
| H1(a) |
6q15 |
CYCSP16 |
NL |
Cytochrome c, somatic pseudogene 16 |
NG_002966 |
Unknown |
| H1(b) |
6q15 |
RNGTT |
NL |
RNA guanylytransferase and 5' phosphatase |
NM_003800 |
mRNA processing |
| H5(a) |
15q24 |
CRABP1 |
3' end |
Cellular and retinoic acid binding protein 1 |
NM_004378 |
Signal transduction |
| H5(b) |
15q25.1 |
IREB2 |
5' end |
Iron-responsive element binding protein 2 |
NM_004136 |
Metabolism |
|
Shown are the genes located closest to each p63 ChIPed DNA sequence and the corresponding chromosome number. Also shown are the location of the p63-binding site within each gene, NCBI accession number, and gene function. NL, Not localized; ND, Not determined; Asterisks indicates those genes that were also identified by other studies. | ||||||
Birkaya et al. BMC Molecular Biology 2007 8:43 doi:10.1186/1471-2199-8-43 |
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