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Open AccessResearch article

Localization of TFIIB binding regions using serial analysis of chromatin occupancy

Gregory S Yochum1 email, Veena Rajaraman2 email, Ryan Cleland1 email and Shannon McWeeney2,3 email

Vollum Institute, Oregon Health and Science University, Portland, OR 97239, USA.

Cancer Institute, Oregon Health and Science University, Portland, OR 97239, USA.

Department of Public Health and Preventative Medicine, Division of Biostatistics, Oregon Health and Science University, Portland, OR 97239, USA.

author email corresponding author email

BMC Molecular Biology 2007, 8:102doi:10.1186/1471-2199-8-102

Published: 12 November 2007

Additional files

Additional file 1:

Distribution of TFIIB GSTs across rat chromosomes. A list of mapped GSTs, corresponding chromosomes, and number of GSTs identified per megabase (Mb) of DNA.

Format: PDF Size: 179KB Download file

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Additional file 2:

Location of TFIIB GSTs and associated RefSeq genes on chomosome 10. Gray bars on the chromosomes are the TFIIB GSTs within 2.5 kb of a RefSeq gene (indicated above the chromosome).

Format: PDF Size: 197KB Download file

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Additional file 3:

Sonicated chromatin input for SACO library construction. Ethidium bromide stained 1% agarose gel of sonicated chromatin used to generate the TFIIB SACO library. L: 1 kb DNA ladder (Invitrogen). The sizes of some ladder fragments are indicated in nucleotide bases.

Format: PDF Size: 600KB Download file

This file can be viewed with: Adobe Acrobat Reader


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