Open Access Research article

Sequence features involved in the mechanism of 3' splice junction wobbling

Kuo-Wang Tsai1, Wen-Ching Chan2,3,4, Chun-Nan Hsu4,5 and Wen-chang Lin1,3*

1 Institute of Biomedical Sciences, Academia Sinica, Taipei, Taiwan

2 Bioinformatics Program, Taiwan International Graduate Program, Academia Sinica, Taipei, Taiwan

3 Institute of Bioinformatics, School of Medicine, National Yang-Ming University, Taipei, Taiwan

4 Institute of Information Sciences, Academia Sinica, Taipei, Taiwan

5 Information Sciences Institute, University of Southern California, Marina del Rey, CA, USA

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BMC Molecular Biology 2010, 11:34 doi:10.1186/1471-2199-11-34

Published: 7 May 2010

Additional files

Additional file 1:

Distribution of 5' alternative splice sites relative to dominant splice site. The brown squares indicate the total number of alternative splices at the 5' splice sites. Alternative splicing occurred in the coding region or in the UTR region of the gene is indicated by green triangles and blue circles respectively.

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Additional file 2:

Sequences of the oligonucleotides used in this study. The gene specific PCR primer pairs and FAM-labeled primer pairs are listed in this table.

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