Table 2 |
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|
Novel miRNA candidates identified in this study |
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|
ID |
Sequencea |
Genomic location |
Strand |
Numberb |
Conservationc |
|
|
|||||
|
bta-un01 |
AAAAACCUGAGUGAACUUUUC |
chr16:7583053-7583073 chr27:21096115-21096135 |
- + |
1 |
|
|
bta-un02 |
AAACAUCUGGUUGGUUGAGAGA |
chrX:3009839-3009860 |
- |
1 |
D; E |
|
bta-un03 |
AAACCCGAACGAACUUUUGGGCC |
chr5:124162584-124162606 chr12:31995980-31996002 chr24:34630276-34630298 chr24:42515045-42515067 |
- - + + |
1 |
|
|
bta-un04 |
AAAGCUGAAUGAACUUUUUGGC |
chr14:58301736-58301757 chrX:291566-291587 chrUn.004.21:72057047-72057068 |
+ + + |
1 |
|
|
bta-un05 |
UUUGCACCUCUGAGAGUGGAG |
chr7:49895499-49895519 |
+ |
1 |
H; C; E |
|
bta-un06 |
AACCCCAGAGAAACUUUCUGGC |
chr8:43938121-43938142 |
- |
1 |
|
|
bta-un07 |
AAGAGUUUGUUCGGGUUUCUC |
chrUn.004.13:739780-739800 |
+ |
2 |
|
|
bta-un08 |
AAGUACAGGAUGCCCAAUGAAU |
chr21:65541270-65541291 |
- |
1 |
|
|
bta-un09 |
AGCCCUUCCCUUUCACUGGCCU |
chr28:32693949-32693969 |
- |
3 |
E |
|
bta-un10 |
AGCGAGGUUGCCCUUUGUAUAU* |
chr21:66021949-66021970 |
+ |
1 |
H; M; R; C; E |
|
bta-un11 |
CAGUCCGGUCCCGCGGUGUCUCC |
chr1:76369850-76369872 |
+ |
1 |
|
|
bta-un12 |
CCUCAGUCAGCCUUGUGGAUGU |
chrX:21829475-21829496 |
- |
56 |
H; E |
|
bta-un13 |
GAAGUUGCCCAUGUUCUUUUCG* |
chr21:66012119-66012140 |
+ |
1 |
H; M; R; C; E |
|
bta-un14 |
GAGAGAUCAGAGGCGCAGAGU |
chr1:65888852-65888872 |
- |
2 |
H; C; E |
|
bta-un15 |
GCGGCCCGCGGGCUCGGAUGCUA |
chr1:76369888-76369908 |
+ |
1 |
|
|
bta-un16 |
UUACUCUGAGUAACCUAACUGU |
chr26:31723064-31723084 |
+ |
1 |
|
|
bta-un17 |
GGACUUCCCUGGUAGCUCAGC |
chrX:18300110-18300129 chrX:82012989-82013008 |
+ - |
2 |
|
|
bta-un18 |
GGUUGAUCAGAGAACAUACAUU |
chr21:66028357-66028378 |
+ |
1 |
H; C; E |
|
bta-un19 |
GUCAGGAUGGCCGAGUGGUC |
chr7:42028223-42028242 |
+ |
1 |
|
|
bta-un20 |
GUGGUUAUCCCUGCUGUGUUCG* |
chr21:66028745-66028766 |
+ |
1 |
H; C; E |
|
bta-un21 |
UCCCCUUCCUUCCGGCCUCCGCC |
chr21:68561367-68561389 |
+ |
1 |
|
|
bta-un22 |
UCCGCCUUGUGCUUCCUGCAU |
chr11:102046802-102046821 |
+ |
1 |
|
|
bta-un23 |
UGAAAAGUUCGUUCGGGUUUUU |
chr1:3474029-3474049 |
- |
9 |
|
|
bta-un24 |
UGCGGGAUCUUUAGUUGUGGUG |
chr21:55700383-55700404 chr25:35972465-35972486 |
- - |
6 |
|
|
bta-un25 |
UGGGGGGAGGCCACACCAUGUCA |
chr7:5546190-5546212 |
- |
1 |
|
|
bta-un26 |
UUGUGGCCGCAGCAACCUCGGU |
chr10:66855690-66855711 chr10:66857969-66857990 |
- + |
1 |
H; M; R; C; E |
|
bta-un27 |
UUCGACUCCCGGUGUGGGAACCA |
chr12:14082775-14082795 chrUn.004.4221:9671-9691 |
- + |
1 |
H; M; R; C; E; G |
|
bta-un28 |
GUGGACUUCCCUGGUAGCUCAGCU |
chr4:106953595-106953618 |
+ |
1 |
|
|
bta-un29 |
GUCAGGAUGGCCGAGCGGUCU |
chr3:8630409-8630429 |
+ |
1 |
H; M; R; C |
|
|
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|
aSome miRNA candidates had end variants. The sequence shown here was the most frequently identified in all the libraries. bThe total number of novel miRNA candidate in all sequenced clones. cConservation of bovine miRNA candidates was evaluated in human (Homo sapiens, H), mouse (Mus musculus, M), and rat (Rattus norvegicus, R), dog (Canis familiaris, C), horse (Equus caballus, E), chicken (Gallus gallus, G) genomes.] *Indicating that the precursor of miRNA candidate was reported in bovine and other species as well as the other arm of the precursor was reported as miRNA. |
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|
Jin et al. BMC Molecular Biology 2009 10:90 doi:10.1186/1471-2199-10-90 |
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