Table 1 |
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Phage-related elements and genomic islands of P. fluorescens Pf-5 genome |
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|
Feature |
Gene range |
5' end |
3' end |
Size (bp) |
%GC |
Presence of integrase |
Type of feature |
|
|
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|
Prophage 01 |
PFL_1210 to PFL_1229 |
1386082 |
1402957 |
16875 |
62.6 |
No |
SfV-like prophage |
|
Prophage 02 |
PFL_1842 to PFL_1846 |
2042157 |
2050549 |
8392 |
46.8 |
Yes* |
Defective prophage in tRNASer |
|
Prophage 03 |
PFL_1976 to PFL_2019 |
2207060 |
2240619 |
33559 |
61.2 |
Yes |
P2-like prophage |
|
Prophage 04 |
PFL_2119 to PFL_2127 |
2338296 |
2351794 |
13498 |
56.3 |
Yes |
Defective prophage in tRNAPro |
|
Prophage 05 |
PFL_3464 to PFL_3456 |
3979487 |
3982086 |
2599 |
55.3 |
Yes* |
Defective prophage in tRNACys |
|
Prophage 06 |
PFL_3739 to PFL_3780 |
4338335 |
4395005 |
56670 |
57.3 |
Yes |
Lambdoid prophage in tRNASer |
|
Genomic island 1 (PFGI-1) |
PFL_4658 to PFL_4753 |
5378468 |
5493586 |
115118 |
56.4 |
Yes |
Putative mobile island PFGI-1 in tRNALys |
|
Genomic island 2 (PFGI-2) |
PFL_4977 to PFL_4984 |
5728474 |
5745256 |
16782 |
51.5 |
Yes |
Genomic island in tRNALeu |
|
|
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|
*, the predicted integrase gene contains frameshift mutation(s). |
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Mavrodi et al. BMC Microbiology 2009 9:8 doi:10.1186/1471-2180-9-8 |
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