Table 1

Phage-related elements and genomic islands of P. fluorescens Pf-5 genome

Feature

Gene range

5' end

3' end

Size

(bp)

%GC

Presence of integrase

Type of feature


Prophage 01

PFL_1210 to PFL_1229

1386082

1402957

16875

62.6

No

SfV-like prophage

Prophage 02

PFL_1842 to PFL_1846

2042157

2050549

8392

46.8

Yes*

Defective prophage in tRNASer

Prophage 03

PFL_1976 to PFL_2019

2207060

2240619

33559

61.2

Yes

P2-like prophage

Prophage 04

PFL_2119 to PFL_2127

2338296

2351794

13498

56.3

Yes

Defective prophage in tRNAPro

Prophage 05

PFL_3464 to PFL_3456

3979487

3982086

2599

55.3

Yes*

Defective prophage in tRNACys

Prophage 06

PFL_3739 to PFL_3780

4338335

4395005

56670

57.3

Yes

Lambdoid prophage in tRNASer

Genomic island 1

(PFGI-1)

PFL_4658 to PFL_4753

5378468

5493586

115118

56.4

Yes

Putative mobile island PFGI-1 in tRNALys

Genomic island 2

(PFGI-2)

PFL_4977 to PFL_4984

5728474

5745256

16782

51.5

Yes

Genomic island in tRNALeu


*, the predicted integrase gene contains frameshift mutation(s).

Mavrodi et al. BMC Microbiology 2009 9:8   doi:10.1186/1471-2180-9-8

Open Data