Table 4 |
||||
|
Regions (REG) and single genes (SING) absent in the S. Enteritidis PT4 P125109 chromosome and predicted by CGH analysis as present in at least one Enteritidis isolate. |
||||
|
ISOLATE DESIGNATION |
GENE RANGE |
HOMOLOGOUSa |
GENE DESCRIPTION |
|
|
|
||||
|
REG 10A |
31/88 |
SDT1842-SDT1843 |
No |
Similar to E coli K12 ymfD, ymfE phage proteins |
|
|
||||
|
REG 10B |
31/88, 8/89, 47/95 (only SDT1860) |
SDT1846-SDT1860 |
No |
Shigella Phage proteins |
|
|
||||
|
REG 11# |
8/89, AF3353, 31/88 (only STY1036) |
STY1034-STY1036 |
SL1344, LT2, TY2, DT104 |
Part of Gifsy-2 antitermination ninG, dnaJ |
|
|
||||
|
REG 12A |
31/88, 8/89 |
SL2583-SL2584 |
SBG |
Phage related protein |
|
|
||||
|
REG 12B |
31/88, 8/89 |
SL2588-SL2594 |
some SBG |
Phage proteins, putative methyltransferase, unknown |
|
|
||||
|
REG 12C |
31/88, 8/89 |
SL2599-SL2600 |
LT2, SDT104 |
Gifsy-1 integrase, unknown |
|
|
||||
|
REG 13 |
AF3353, 8/89 (only STY1013) |
STY1011-STY1013 |
TY2, LT2, SL1344, DT104 |
Phage proteins (integrase, excisionase) |
|
|
||||
|
REG 14 |
AF3353, 8/89 (only STY1021) |
STY1021-STY1024 |
TY2, LT2, SL1344, DT104 |
Phage proteins |
|
|
||||
|
REG 15A# |
AF3353 |
STY3674-STY3689 |
SL1344, LT2, TY2, SPA |
ST35 phage proteins |
|
|
||||
|
REG 15B |
AF3353 |
STY3696-STY3702 |
TY2, SPA, LT2, SL1344 |
ST35 phage proteins |
|
|
||||
|
REG16A |
AF3353 |
STY4600-STY4602 |
TY2, SPA. LT2, SL1344, SBG (except 4600) |
Part of S. Typhi phage SopE |
|
|
||||
|
REG16B |
AF3353 |
STY4605-STY4607 |
TY2, SPA, LT2, SL1344, SBG |
Part of S. Typhi phage SopE |
|
|
||||
|
REG16C# |
AF3353 |
STY4613-STY4628 |
TY2, SPA. LT2, SL1344 (except 4619) |
Part of S. Typhi phage SopE |
|
|
||||
|
REG16D# |
AF3353 |
STY4633-STY4635 |
SL1344, LT2, SPA |
Part of S. Typhi phage SopE |
|
|
||||
|
REG16E |
AF3353 |
STY4638-STY4639 |
TY2, SPA, LT2. SL1344 (except 4639) |
Part of S. Typhi phage SopE |
|
|
||||
|
REG16F |
AF3353 |
STY4641-STY4645 |
TY2, SPA. LT2 (except 4641) |
Part of S. Typhi phage SopE |
|
|
||||
|
SING 10 |
53/94, 57/94, 47/95, 49/98 |
SBG0310 |
No |
unknown |
|
|
||||
|
SING 11 |
31/88 |
SBG3602 |
LT2, CT18 |
Hypothetical protein |
|
|
||||
|
SING 12 |
S1400/94 |
STY0114 |
TY2, SPA |
Putative IS transposase |
|
|
||||
|
SING 13 |
77/02 |
STY0480 |
TY2, SPA |
Hypothetical protein |
|
|
||||
|
SING 14 |
49/98 |
STY4582 |
No |
Exported protein |
|
|
||||
|
SING 15 |
31/88 |
STM0293 |
SL1344, DT104 |
unknown |
|
|
||||
|
SING 16 |
31/88 |
SDT2674 |
SL1344 |
unknown |
|
|
||||
|
SING 17 |
31/88, 8/89 |
STM2584 |
DT104, SL1344 |
gogB, leucine-rich repeat protein |
|
|
||||
|
SING 18 |
49/98 |
STY3619 |
TY2, SPA, LT2, SL1344 |
Conserved membrane protein |
|
|
||||
|
SING 19 |
AF3353 |
SBG0897 |
SBG |
Phage related protein |
|
|
||||
|
SING 20 |
AF3353 |
SDT1865 |
No |
unknown |
|
|
||||
|
SING 21 |
AF3353 |
SDT3861 |
No |
unknown |
|
|
||||
|
SING 22 |
AF3353 |
STY1073 |
LT2, TY2 |
unknown |
|
|
||||
|
SING 23 |
AF3353 |
STY2013 |
TY2 |
unknown |
|
|
||||
|
SING 24 |
AF3353 |
STY4600 |
TY2, SPA |
Transcriptional regulator |
|
|
||||
|
SING 25 |
AF3353 |
STY4619 |
TY2, SPA |
Putative membrane protein |
|
|
||||
|
SING 26 |
AF3353 |
STY4639 |
TY2, LT2, SPA |
Hypothetical protein |
|
|
||||
|
a indicates when the REG or SING has homologous region described in other sequenced Salmonella serovars (see list of abbreviations). # indicates that the genetic region was previously described as variable among S. Enteritidis isolates [21]. |
||||
|
Betancor et al. BMC Microbiology 2009 9:237 doi:10.1186/1471-2180-9-237 |
||||
