|
Results of the LAMP assay |
|||||
| Species |
Strains |
No. of strains |
LAMP results |
Production of CT/LT |
Source |
|
|
|||||
| Vibrio cholerae O1 |
26 |
||||
| 61H151 |
+ |
+ |
Human feces, Japan?, 1986 |
||
| 4H77 |
+ |
+ |
Human feces, Thailand, 1992 |
||
| 5H176 |
+ |
+ |
Human feces, Indonesia, 1993 |
||
| 5H332 |
+ |
+ |
Human feces, Indonesia, 1993 |
||
| 6H58 |
+ |
+ |
Human feces, Thailand, 1994 |
||
| 6H62 |
+ |
+ |
Human feces, Unknown, 1994 |
||
| 6H346 |
+ |
+ |
Human feces, Indonesia, 1994 |
||
| 7H164 |
+ |
+ |
Human feces, Indonesia, 1995 |
||
| 7H285 |
+ |
+ |
Human feces, Japan, 1995 |
||
| 8H215 |
+ |
+ |
Human feces, Japan, 1996 |
||
| 9H3 |
+ |
+ |
Human feces, Thailand, 1997 |
||
| 10H1 |
+ |
+ |
Human feces, China, 1998 |
||
| 10H169 |
+ |
+ |
Human feces, Philippines, 1998 |
||
| 10H664 |
+ |
+ |
Human feces, Philippines, 1999 |
||
| 11H215 |
+ |
+ |
Human feces, India, 1999 |
||
| 11H558 |
+ |
+ |
Human feces, Madagascar, 2000 |
||
| 13H59 |
+ |
+ |
Human feces, Indonesia, 2001 |
||
| 13H82 |
+ |
+ |
Human feces, Japan, 2001 |
||
| 13H173 |
+ |
+ |
Human feces, Japan, 2001 |
||
| 13H257 |
+ |
+ |
Human feces, Indonesia, 2001 |
||
| 15H245 |
+ |
+ |
Human feces, Thailand, 2004 |
||
| 17H16 |
+ |
+ |
Human feces, Indonesia, 2005 |
||
| 18H24 |
+ |
+ |
Human feces, India, 2006 |
||
| 62H92 |
- |
- |
Human feces, Japan?, 1987 |
||
| 2H283 |
- |
- |
Human feces, Indonesia, 1991 |
||
| 11H259 |
- |
- |
Human feces, Egypt/Greece, 1999 |
||
| Vibrio cholerae O139 |
13 |
||||
| 236-93 |
+ |
+ |
Human, India, 1993 |
||
| 1034-93 |
+ |
+ |
Human, Pakistan, 1993 |
||
| 183-93 |
+ |
+ |
Human, Bangladesh, 1993 |
||
| 21-93 |
+ |
+ |
Human, Chennai, India, 1993 |
||
| 65-93 |
+ |
+ |
Human, Kolkata, India, 1993 |
||
| 481-93 |
+ |
+ |
Human, Thailand, 1993 |
||
| 495-96 |
+ |
+ |
Human, Nepal, 1996 |
||
| 99-93 |
+ |
+ |
Human, Vellore, India, 1993 |
||
| 147-93 |
+ |
+ |
Human, Madurai, India, 1993 |
||
| VC-23 |
+ |
+ |
Unknown, 1995 |
||
| 333-93 |
+ |
+ |
Pond, India, 1993 |
||
| 1033-93 |
- |
- |
Human, Sri Lanka, 1993 |
||
| Arg-3 |
- |
- |
Human, Argentine |
||
| Vibrio cholerae non-O1/non-O139 |
8 |
||||
| 61H37 |
- |
- |
Human feces, Thailand, 1986 |
||
| 3H264 |
- |
- |
Human feces, Indonesia, 1992 |
||
| 5H231 |
- |
- |
Human feces, Indonesia, 1993 |
||
| 9H237 |
- |
- |
Human feces, China, 1997 |
||
| 9H300 |
- |
- |
Human feces, India, 1997 |
||
| 12H207 |
- |
- |
Human feces, 2000 |
||
| 19H149 |
- |
- |
Human feces, 2007 |
||
| 3H222 |
- |
- |
Clam, Japan, 1991 |
||
| LT-producing E. coli |
7 |
- (0/7) |
+ (7/7) |
Human feces, Japan |
|
| V. parahaemolyticus |
6 |
- |
ND |
Human feces, Japan |
|
| V. vulnificus |
3 |
- |
ND |
IFO15645T and human feces, Japan |
|
| V. alginolyticus |
2 |
- |
ND |
IFO15630T and unknown source |
|
| V. fluvialis |
1 |
- |
ND |
Human feces |
|
| V. furnissii |
1 |
- |
ND |
Human feces |
|
| V. harveyi |
1 |
- |
ND |
IFO15634T |
|
| V. metschnikovii |
1 |
- |
ND |
Human feces |
|
| V. mimicus |
1 |
- |
ND |
Human feces |
|
| Other bacteria |
30 |
- |
ND |
Described in Methods. |
|
|
+, positive reaction; -, negative reaction (positive number/strain number tested); ND, not determined. | |||||
Yamazaki et al. BMC Microbiology 2008 8:94 doi:10.1186/1471-2180-8-94 |
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