Table 1

Genes upregulated at least 2-fold after acid shift.a

1 min

Log2 ratios

Maurer et al 2005b

% Recovery

5 min

Log2 ratios

Maurer et al 2005b

% Recovery

10 min

Log2 ratios

Maurer et al 2005b

% Recovery


hisL

2.3

66

yagU

4.3

+

10

cadB

4.7

0

thrL

1.7

77

bdm

4.0

20

yagU

3.8

+

10

b2596

1.6

90

ymgB

3.8

44

glpD

3.7

0

raiA

1.5

46

glpD

3.5

0

glpK

3.5

0

YfiD

1.5

+

52

sra

3.1

+

0

hdeB

3.5

+

0

YifN

1.4

75

cadB

3.1

0

glpF

3.3

0

YifO

1.4

87

ymgA

3.0

38

hdeA

3.3

+

0

evgA

1.3

45

ymgC

2.6

52

sra

3.3

+

0

yhcN

1.3

+

23

yhcN

2.6

+

23

yahO

3.2

0

ymgB

1.3

44

yneI

2.6

57

bdm

3.2

20

uspD

1.2

44

gatB

2.5

+

0

cadA

3.2

+

0

ymgA

1.2

38

raiA

2.5

46

osmY

3.1

0

yagU

1.1

+

10

aceB

2.4

33

gatB

3.1

+

0

pmrD

1.1

68

b2596

2.4

90

lldR

3.1

0

ycgZ

1.0

39

uspD

2.4

+

44

gatC

3.0

+

gltA

2.3

+

10

yjbJ

3.0

0

lldR

2.3

0

lldD

2.9

+

0

gadE

2.2

15

yhjX

2.8

0

lldD

2.2

+

0

gatA

2.8

+

0

osmY

2.2

0

lldP

2.8

+

0

glpF

2.2

0

rcsA

2.7

0

ycgZ

2.2

39

yjdL

2.6

0

osmB

2.2

0

gatZ

2.6

+

0

rcsA

2.1

0

tnaC

2.5

0

hdeB

2.1

+

0

glpQ

2.5

0

gatA

2.1

+

0

clpB

2.4

+

0

aceA

2.1

8

gcvT

2.4

0

ygaC

2.1

46

ivy

2.3

0

ivy

2.0

0

osmB

2.3

0

yfiD

2.0

+

52

glpT

2.3

0

yahO

2.0

0

dppF

2.3

0

gatZ

2.0

0

msyB

2.2

0

elbA

2.0

59

talA

2.2

0

yjbJ

1.9

0

yiaG

2.2

0

lldP

1.9

+

0

gcvH

2.2

0

hisL

1.9

66

sucD

2.2

+

0

amn

1.9

27

ymgB

2.1

44

yeiG

1.9

+

25

gltA

2.1

+

10

hdeA

1.9

+

0

gatY

2.0

0

glpK

1.9

0

ydiZ

2.0

0

gatC

1.8

yeaD

2.0

yhjX

1.8

0

yhcN

2.0

+

23

crl

1.8

64

gadE

1.9

15

hchA

1.8

27

ygaM

1.9

0

gadW

1.8

17

aceA

1.9

8

gltB

1.7

yhcO

1.9

0

ilvC

1.7

65

dps

1.9

+

0

arcB

1.7

50

ymgA

1.9

38

evgA

1.7

45

ygdI

1.8

+

0

uspA

1.6

60

gadB

1.8

0

asd

1.6

33

bfr

1.7

0

ghrB

1.6

24

gltB

1.7

osmC

1.6

11

ygiW

1.7

+

0

cfa

1.6

+

17

sthA

1.7

+

0

nlpA

1.6

+

51

aceB

1.6

33

ycgK

1.6

38

yphA

1.6

0

intA

1.6

77

elaB

1.6

0

dps

1.6

+

0

yjiT

1.6

0

rhsA

1.6

30

srlD

1.6

+

0

fimB

1.6

98

spy

1.6

0

yieF

1.6

+

0

aldA

1.6

+

0

fpr

1.6

+

47

yieF

1.6

+

0

yiiS

1.6

+

23

acs

1.6

0

yieE

1.5

+

33

manY

1.6

0

gatY

1.5

0

hdeD

1.6

0

yhcO

1.5

0

dppA

1.5

0

yggE

1.5

0

gadA

1.5

0

insI

1.5

47

yeaG

1.5

0

clpS

1.5

62

yggE

1.5

0

glgC

1.5

2

mglB

1.5

0

ydiZ

1.5

0

yncC

1.5

0

dtd

1.5

47

b1005

1.5

0

marA

1.5

+

21

gadW

1.5

17

sthA

1.4

+

0

ykgA

1.4

+

0

argE

1.4

57

osmC

1.4

11

clpB

1.4

+

0

glgC

1.4

2

serC

1.4

+

57

ytfK

1.4

0

msyB

1.4

+

0

sdhB

1.4

+

0

tas

1.4

+

24

dhaM

1.4

+

0

ygdI

1.4

+

0

yeiG

1.4

+

25

rsd

1.4

67

manZ

1.4

0

aroG

1.4

58

ygaU

1.4

0

bcsE

1.4

+

37

ykgE

1.4

0

yciI

1.4

74

sdhC

1.4

+

0

gcvR

1.4

81

dadA

1.4

nrdH

1.3

78

amn

1.4

27

bcsF

1.3

31

yodC

1.4

+

0

ygdR

1.3

22

manX

1.4

0

acnB

1.3

+

15

udp

1.4

+

0

appY

1.3

36

fumA

1.4

+

0

ypeC

1.3

36

glgS

1.4

0

yrdA

1.3

29

ycgZ

1.3

39

hdfR

1.3

73

cfa

1.3

+

17

yjdJ

1.3

4

ybjP

1.3

0

thrL

1.3

77

raiA

1.3

46

umC

1.3

5

oppB

1.3

yncC

1.3

0

yehE

1.3

0

yjiT

1.3

0

uspD

1.3

+

44

gcvT

1.3

0

mqo

1.3

+

0

ugpB

1.3

25

oppA

1.3

ygbE

1.3

+

1

sdhA

1.3

+

0

hdfR

1.3

65

hdhA

1.3

0

hdhA

1.3

0

hchA

1.3

27

yjgK

1.3

+

41

yhhA

1.3

0

cadA

1.2

+

dppD

1.3

0

rpoS

1.2

poxB

1.3

0

oppB

1.2

srlE

1.3

+

0

dadA

1.2

yjdI

1.2

0

oppA

1.2

ygbE

1.2

+

1

ybjP

1.2

0

ghrB

1.2

24

sbmC

1.2

47

yjdJ

1.2

4

malP

1.2

55

ymgC

1.2

52

msrA

1.2

50

mglA

1.2

0

bcp

1.2

72

fumC

1.2

5

arcA

1.2

47

wrbA

1.2

0

mqo

1.2

+

0

ykgF

1.2

0

ycbB

1.2

42

yqjD

1.2

0

yjdL

1.2

0

cdd

1.2

+

0

yhhA

1.2

0

yiiS

1.2

+

23

malQ

1.2

58

yqjC

1.2

0

nadE

1.2

+

39

groL

1.2

+

0

aldA

1.2

+

0

ygaF

1.2

0

cyaA

1.2

+

73

otsB

1.2

0

dkgA

1.2

9

marA

1.1

+

21

marR

1.2

+

28

htpG

1.1

+

0

glgS

1.2

0

acnB

1.1

+

15

yeaR

1.2

11

srlA

1.1

+

0

gdhA

1.2

54

ybeL

1.1

0

ykgA

1.2

+

0

ygaC

1.1

46

yfaO

1.2

34

asd

1.1

33

soxS

1.2

85

dkgA

1.1

9

ygiN

1.2

63

rhsA

1.1

30

fucK_

1.2

65

ydiH

1.1

+

0

yodA

1.2

79

dhaK

1.1

+

0

sucD

1.2

+

0

yneI

1.1

57

argT

1.2

58

sdhD

1.1

+

0

ygaM

1.2

0

dhaL

1.1

0

rhsD

1.2

108

yhdN

1.1

6

fxsA

1.1

yeaQ

1.1

+

0

yqhD

1.1

uspB

1.1

0

yihY

1.1

yeaR

1.1

11

yhdN

1.1

6

gltD

1.1

+

0

gloB

1.1

46

tas

1.0

+

24

hdeD

1.1

0

ygdR

1.0

22

sdhA

1.1

+

0

sodC

1.0

0

yiaG

1.1

0

yieE

1.0

+

33

zntR

1.1

23

galP

1.0

0

yjeI

1.1

84

fliY

1.0

+

0

ldhA

1.1

37

nemA

1.0

yqhD

1.1

18

srlD

1.1

+

0

yihY

1.1

18

yeaC

1.1

+

19

gcvH

1.1

0

talA

1.1

0

yphA

1.1

0

ybaQ

1.1

96

nrdI

1.1

80

ygiW

1.1

+

0

yfjU

1.1

11

elaB

1.1

0

yjdC

1.1

16

yfbU

1.1

46

bcsG

1.1

34

sdhC

1.1

+

0

yohN

1.1

+

11

bolA

1.1

65

yjdI

1.1

0

sdhB

1.1

+

0

ydiV

1.1

62

mcrB

1.1

15

yggG

1.1

18

dppA

1.1

0

mcrC

1.1

12

nemA

1.0

yeaD

1.0

ygaU

1.0

0

yjbQ

1.0

+

55

yfbQ

1.0

+

52

yihD

1.0

65

ybeL

1.0

0

phoP

1.0

44

nlpD

1.0

20

gadB

1.0

0

uspB

1.0

0

rpoN

1.0

56

yfjH

1.0

38

yaiB

1.0

8

spy

1.0

0

betI

1.0

138

lrp

1.0

44

ybhGt

1.0

74

gadX

1.0

23

ygiT

1.0

101

kch

1.0

47

ygdH

1.0

37


a Values shown represent the log2 ratio of expression indices compared to those at time zero. Expression ratios of 2-fold or greater are shown. Percent recovery is defined under Results; a blank cell indicates recovery could not be defined.

b Ref [11]

Kannan et al. BMC Microbiology 2008 8:37   doi:10.1186/1471-2180-8-37

Open Data