Table 4

Identities of variable region V6-V8 DGGE bands picked and sequenced from the gel in Figure 6A

DGGE band number

Closest relative (if known)

Origin and accession number

Sequence homology (%)


1

Akkermansia muciniphila

Adult human gut [GenBank:AY271254]

97


2

Uncultured human gut bacterial clone

Elderly human [GenBank:AY920038]

100


3

Uncultured human gut bacterium

Human gut [GenBank:EF402349]

99


4

Roseburia faecalis

Healthy adult faecal sample [GenBank:DQ144129]

99


5

Uncultured human gut bacterial clone

Human adult faecal sample [GenBank:DQ795140]

98


6

Uncultured bacterial clone

Rumen [GenBank:DQ394592]

96


7

Uncultured Clostridiales clone

Human gut [GenBank:EU530233]

99


8

Lachnobacterium bovis

Animal rumen [GenBank:AF298665]

100


9

Lachnospira pectinoschiza

Greenland ice core [GenBank:AY169414]

98


10

Butyrivibrio crossotus

No origin given [GenBank:X89981]

98


11

Uncultured bacterial clone

Human adult faecal sample [GenBank:AY916377]

99


12

Eubacterium rectale

Healthy human gut [GenBank:AY804151]

99


13

Uncultured bacterial clone

Porcine intestine [GenBank:AF371769]

100


14

Uncultured bacterial clone

Human Crohn's disease patient [GenBank:AF530350]

99


15

Bifidobacterium longum NCC2705

Human intestinal tract [GenBank:AE014295]

100


16

Uncultured bacterial clone

Animal rumen [GenBank:DQ394592]

97


17

Uncultured bacterial clone

Human gut [GenBank:AF132248]

94


18

Eubacterium rectale

Healthy human gut [GenBank:AY804151]

99


19

Uncultured bacterial clone

Crohn's disease patient [GenBank:AF530350]

97


20

Uncultured bacterial clone

Elderly human [GenBank:AY920002]

99


Harrington et al. BMC Microbiology 2008 8:195   doi:10.1186/1471-2180-8-195

Open Data