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List of selected up- and down- regulated genes during alkali adaptation. |
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| Locus ID |
Symbol |
Fold |
P value |
Sub-functional category |
Gene/protein name |
|
|
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| lmo2673 |
NA |
5.38 |
0.000 |
Adaptations to atypical conditions |
Conserved hypothetical protein |
| lmo1074 |
NA |
-3.92 |
0.007 |
Amino acids, peptides and amines |
Highly similar to teichoic acid translocation permease protein TagG |
| lmo2250 |
arpJ |
-3.65 |
0.007 |
Similar to amino acid ABC transporter, permease protein |
|
| lmo0847 |
NA |
-3.34 |
0.008 |
Similar to glutamine ABC transporter (binding and transport protein) |
|
| lmo0997 |
clpE |
3.64 |
0.013 |
ATP-dependent protease |
|
| LMOf2365_2469 |
NA |
3.44 |
0.025 |
Anions |
Phosphate ABC transporter, ATP-binding protein |
| LMOf2365_2470 |
NA |
4.19 |
0.002 |
Phosphate ABC transporter, permease protein |
|
| lmo2495 |
NA |
6.03 |
0.000 |
Similar to phosphate ABC transporter |
|
| LMOf6854_2559 |
NA |
8.01 |
0.000 |
Phosphate ABC transporter, permease protein |
|
| lmo0097 |
NA |
-6.17 |
0.004 |
Aromatic amino acid family |
Similar to PTS system mannose-specific, factor IIC |
| lmo2202 |
NA |
-3.61 |
0.001 |
Biosynthesis |
Similar to 3-oxoacyl- acyl-carrier protein synthase |
| LMOf2365_2674 |
NA |
3.18 |
0.055 |
Putative Dihydroxyacetone kinase, Dak1 subunit |
|
| LMOf6854_2815 |
NA |
5.21 |
0.000 |
Dihydroxyacetone kinase, Dak2 subunit, putative |
|
| LMOf6854_2814 |
NA |
5.79 |
0.000 |
Dihydroxyacetone kinase, Dak1 subunit, putative |
|
| lmo1389 |
NA |
-4.31 |
0.006 |
Carbohydrates, organic alcohols & acids |
Similar to sugar ABC transporter, ATP-binding protein |
| LMOf2365_1877 |
NA |
-7.45 |
0.003 |
Cations and iron carrying compounds |
Manganese ABC transporter, ATP-binding protein |
| lmo1848 |
NA |
-6.13 |
0.003 |
Similar metal cations ABC transporter |
|
| lmo2087 |
NA |
4.03 |
0.004 |
Similar to unknown proteins |
|
| lmo2507 |
ftsE |
-4.06 |
0.002 |
Cell division |
Highly similar to cell-division ATP-binding protein FtsE |
| lmo0582 |
iap |
-3.9 |
0.004 |
P60 extra cellular protein, invasion associated protein iap |
|
| lmo1603 |
NA |
-5.43 |
0.006 |
Degradation of proteins, peptides, and glycopeptides |
Similar to aminopeptidase |
| lmo2230 |
NA |
5.04 |
0.000 |
Detoxification |
Similar to arsenate reductase |
| LMOf2365_2669 |
NA |
3.22 |
0.048 |
DNA interactions |
Transcriptional regulator, TetR family |
| lmo1398 |
recA |
3.12 |
0.001 |
DNA replication, recombination, and repair |
Recombination protein recA |
| lmo2489 |
uvrB |
3.42 |
0.026 |
Excinuclease ABC (subunit B) |
|
| lmo2676 |
NA |
3.48 |
0.022 |
Similar to UV-damage repair protein |
|
| lmo2717 |
cydB |
-3.3 |
0.004 |
Electron transport |
Highly similar to cytochrome D ubiquinol oxidase subunit II |
| lmo1067 |
NA |
-4.37 |
0.005 |
General |
Similar to GTP-binding elongation factor |
| lmo2494 |
NA |
5.35 |
0.001 |
Glycolysis/gluconeogenesis |
Similar to negative regulator of phosphate regulon |
| lmo0786 |
NA |
-4.02 |
0.001 |
Other |
Similar to acyl-carrier phosphodiesterase and to NAD(P)H dehydrogenase |
| lmo1870 |
NA |
4.22 |
0.002 |
Similar to alkali phosphatase |
|
| lmo0820 |
NA |
4.7 |
0.000 |
Some similarity to acatyltransferases |
|
| lmo1974 |
NA |
5.12 |
0.001 |
Similar to transcription regulators, (GntR family) |
|
| LMOh7858_0838 |
NA |
3.24 |
0.104 |
PTS |
PTS system, mannose/fructose/sorbose family, IIA component subfamily |
| lmo2632 |
rplC |
-3.44 |
0.003 |
Ribosomal proteins : synthesis and modification |
Ribosomal protein L3 |
| lmo0250 |
rplJ |
-3.36 |
0.004 |
Ribosomal protein L10 |
|
| lmo2631 |
rplD |
-3.26 |
0.004 |
Ribosomal protein L4 |
|
| lmo1252 |
NA |
5.69 |
0.001 |
Role category not yet assigned |
Similar to B. subtilis YxkD protein |
| lmo2695 |
NA |
4.55 |
0.001 |
Sugars |
Similar to dihydroxyacetone kinase |
Giotis et al. BMC Microbiology 2008 8:102 doi:10.1186/1471-2180-8-102 |
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