Table 2
|
Description of the M. tuberculosis clusters found in Venezuela. |
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| 1SIT |
Spoligotyping patterns -Binary description |
2n |
% |
3Clade |
4C-1 |
|
|
|||||
| 17 |
 |
122 |
21.94 |
LAM-2 |
Ubiquitous |
| 42 |
 |
86 |
15.47 |
LAM-9 |
Ubiquitous |
| 93 |
 |
70 |
12.59 |
LAM-5 |
Ubiquitous |
| 53 |
 |
26 |
4.6S |
T-1 |
Ubiquitous |
| 20 |
 |
26 |
4.63 |
LAM-1 |
Ubiquitous |
| 605 |
 |
18 |
3.24 |
U |
Loc (VEN/USA) |
| 1691 |
 |
14 |
2.52 |
LAM-2 |
Endemic (VEN) |
| 60 |
 |
13 |
2.39 |
LAM-4 |
Ubiquitous |
| 905 |
 |
10 |
1.60 |
U |
Loc (VEN-USA-ARG) |
| 118 |
 |
9 |
1.61 |
T-2 |
Ubiquitous |
| 50 |
 |
9 |
1.61 |
H-3 |
Ubiquitous |
| 51 |
 |
8 |
1.43 |
T-1 |
Ubiquitous |
| 333 |
 |
7 |
1.25 |
LAM-5 |
Loc (GUP-GUF-HTI-VEN) |
| 960 |
 |
5 |
0.90 |
U |
Loc (VEN-USA) |
| 34 |
 |
5 |
0.90 |
S |
Ubiquitous |
| 194 |
 |
5 |
0.90 |
LAM-4 |
Loc (USA-BRA-MEX-VEN) |
| 1696 |
 |
5 |
0.90 |
LAM-5 |
Endemic (VEN) |
| 47 |
 |
5 |
0.90 |
H-1 |
Ubiquitous |
| 130 |
 |
4 |
0.71 |
LAM-3 |
Ubiquitous |
| 150 |
 |
4 |
0.71 |
LAM-9 |
Ubiquitous |
| 397 |
 |
4 |
0.71 |
U |
Loc (ITA-BRA-ARG-USA-VEN) |
| 1692 |
 |
4 |
0.71 |
U |
Endemic (VEN) |
| 1700 |
 |
4 |
0.71 |
T-1 |
Endemic (VEN) |
| 33 |
 |
3 |
0.54 |
LAM-3 |
Ubiquitous |
| 44 |
 |
3 |
0.54 |
T-4 |
Ubiquitous |
| 58 |
 |
3 |
0.54 |
T-5 |
Ubiquitous |
| 64 |
 |
3 |
0.54 |
LAM-6 |
Ubiquitous |
| 162 |
 |
3 |
0.54 |
U |
Loc (ARG-VEN-USA-FIN-FXX-ITA) |
| 376 |
 |
3 |
0.54 |
LAM-3 |
Loc (VEN-USA) |
| 578 |
 |
3 |
0.54 |
LAM-9 |
Loc (USA-VEN) |
| 1698 |
 |
3 |
0.54 |
U |
Endemic (VEN) |
| 1701 |
 |
3 |
0.54 |
LAM-9 |
Endemic (VEN) |
| 1702 |
 |
3 |
0.54 |
LAM-5 |
Endemic (VEN) |
| 1705 |
 |
3 |
0.54 |
T-1 |
Endemic (VEN) |
| 1713 |
 |
3 |
0.54 |
LAM-1 |
Endemic (VEN) |
| 1718 |
 |
3 |
0.54 |
LAM-9 |
Endemic (VEN) |
| 52 |
 |
2 |
0.36 |
T-2 |
Ubiquitous |
| 62 |
 |
2 |
0.36 |
H-1 |
Ubiquitous |
| 71 |
 |
2 |
0.36 |
S |
Ubiquitous |
| 106 |
 |
2 |
0.36 |
U |
Loc (CUB-ECU-M EX-USA-VEN) |
| 132 |
 |
2 |
0.36 |
U |
Loc (ESP-AUS-BRA-VEN) |
| 167 |
 |
2 |
0.36 |
T |
Ubiquitous |
| 178 |
 |
2 |
0.36 |
LAM-4 |
Loc (CUB-SEN-VEN) |
| 196 |
 |
2 |
0.36 |
T-1 |
Ubiquitous |
| 388 |
 |
2 |
0.36 |
LAM-9 |
Ubiquitous |
| 389 |
 |
2 |
0.36 |
LAM-1 |
Loc (BRA-PRT-FIN-VEN) |
| 430 |
 |
2 |
0.36 |
T-4 |
Loc (USA-VEN) |
| 1166 |
 |
2 |
0.36 |
T-1 |
Ubiquitous (MWI-USA-VEN) |
| 1661 |
 |
2 |
0.36 |
LAM-2 |
Loc (VEN-BRA) |
| 1693 |
 |
2 |
0.36 |
LAM-5 |
Endemic (VEN) |
| 1699 |
 |
2 |
0.36 |
LAM-9 |
Endemic (VEN) |
| 1703 |
 |
2 |
0.36 |
LAM-9 |
Endemic (VEN) |
| 1704 |
 |
2 |
0.36 |
LAM-5 |
Endemic (VEN) |
| 1707 |
 |
2 |
0.36 |
T-1 |
Endemic (VEN) |
| 1711 |
 |
2 |
0.36 |
LAM-2 |
Endemic (VEN) |
| 1714 |
 |
2 |
0.36 |
LAM-9 |
Endemic (VEN) |
| 1715 |
 |
2 |
0.36 |
LAM-4 |
Endemic (VEN) |
| 1716 |
 |
2 |
0.36 |
T-3 |
Endemic (VEN) |
| 1719 |
 |
2 |
0.36 |
LAM-2 |
Endemic (VEN) |
| 1694 |
 |
1 |
0.18 |
LAM-5 |
Loc (VEN-USA)-Cluster inter-region |
| 1695 |
 |
1 |
0.18 |
LAM-2 |
Loc (VEN-BRA)-Cluster inter-region |
| 1697 |
 |
1 |
0.18 |
LAM-9 |
Loc (VEN-FXX)-Cluster inter-region |
| 1706 |
 |
1 |
0.18 |
LAM-9 |
Loc (VEN-USA)-Cluster inter-region |
| 1708 |
 |
1 |
0.18 |
LAM-9 |
Loc (VEN-LVA)-Cluster inter-region |
| 1709 |
 |
1 |
0.18 |
LAM-5 |
Loc (VEN-USA)-Cluster inter-region |
| 1710 |
 |
1 |
0.18 |
LAM-4 |
Loc (VEN-NLD)-CIuster inter-region |
| 1717 |
 |
1 |
0.18 |
X-1 |
Loc (VEN-AUS)-Cluster inter-region |
|
|
|||||
| Total |
556 |
100 |
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|
1SIT, designation of the spoligotype in the international database [19]. 2n: Number of strains. 3Clade: defined mainly as described [20, 21] LAM: Latin American and Mediterranean, H: Haarlem, T (ill-defined T clade), S: S clade, X: X clade, U: Undesignated. 4C-1: qualifier that tentatively defines an SIT as Endemic, Loc: localized or ubiquitous, as defined in Filliol et al. [20]. Geographic distribution: VEN: Venezuela, USA: United States of America, BRA: Brazil, GUP: Guadeloupe, GUF: French Guiana, HTI: Haiti, ESP: Spain, ECU: Ecuador, ARG: Argentina, CUB: Cuba, MEX: Mexico, SEN: Senegal, PRT: Portugal, FIN: Finland, ITA: Italy, MWI: Malawi, FXX: Metropolitan France, LVA: Latvia, NLD: The Netherlands, AUS: Australia. | |||||
Aristimuño et al. BMC Microbiology 2006 6:90 doi:10.1186/1471-2180-6-90 |
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