Table 2

Identified proteins of the most over-represented COG category.

gi

Protein

SigP

TMD

COG

COG Description

Gene

42629692

COG1862: Preprotein translocase subunit YajC [Haemophilus influenzae R2846]

n

y1

1862

Preprotein translocase subunit YajC

YajC

46129041

COG2854: ABC-type transport system involved in resistance to organic solvents, auxiliary component [Haemophilus influenzae R2846]

y

y1

2854

ABC-type exporter of toluene and related compounds, periplasmic component ABC-type exporter of toluene and related compounds, periplasmic component

Ttg2D

1573750

protein-export protein (secB) [Haemophilus influenzae Rd KW20]

n

n

1952

Preprotein translocase subunit SecB

SecB

46133774

COG0541: Signal recognition particle GTPase [Haemophilus influenzae R2866]

n

y1

0541

Signal recognition particle GTPase

Ffh

68057469

Outer membrane protein P4, NADP phosphatase [Haemophilus influenzae 86-028NP]

y

n

2503

Predicted secreted acid phosphatase

-

42630977

COG0740: Protease subunit of ATP-dependent Clp proteases [Haemophilus influenzae R2866]

n

n

0740

Protease subunit of ATP-dependent Clp proteases

ClpP

53733238

COG0823: Periplasmic component of the Tol biopolymer transport system [Haemophilus influenzae R2866]

n

y1

0823

Periplasmic component of the Tol biopolymer transport system

TolB

1573881

GTP-binding protein [Haemophilus influenzae Rd KW20]

n

n

1217

Predicted membrane GTPase involved in stress response

TypA

N. gi is the NCBI gene ID number; Protein is from the gi entry at NCBI; SigP indicates presence of a predicted signal sequence as determined by SignalP (28); TMD represents the presence of transmembrane domains as predicted by TMHMM (29); COG is the COG number for the identified protein with associated description and gene.

Gallaher et al. BMC Microbiology 2006 6:65   doi:10.1186/1471-2180-6-65